RNA–Protein interactions for RNA: ENST00000597776.1

LSM4-205, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, human

TSL 2

Gene LSM4, Length 446 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LSM4-205	ENST00000597776	LARGE1	O95461	756 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	PDGFB	P01127	241 aa	Predicted RBP	11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	SSB	P05455	408 aa	Known RBP eCLIP	11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	FOSB	P53539	338 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	AK2	P54819	239 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	ITIH3	Q06033	890 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	BMS1	Q14692	1282 aa	Known RBP	11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	XKR9	Q5GH70	373 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	SRGAP1	Q7Z6B7	1085 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	C4orf19	Q8IY42	314 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	TMEM87A	Q8NBN3	555 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	RNF149	Q8NC42	400 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	KREMEN2	Q8NCW0	462 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	URGCP	Q8TCY9	931 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	SLC22A17	Q8WUG5	538 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	RSPH1	Q8WYR4	309 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	PGBD4	Q96DM1	585 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	SMOC2	Q9H3U7	446 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	RSAD1	Q9HA92	442 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	NR2E1	Q9Y466	385 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	KMT2E	Q8IZD2	1858 aa		11.76	□□□□□ -0.53
LSM4-205	ENST00000597776	ARID2	Q68CP9	1835 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	WNT7A	O00755	349 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	POMC	P01189	267 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	FDPS	P14324	419 aa	Known RBP	11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	KRT2	P35908	639 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	PTPN14	Q15678	1187 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	OTUD6A	Q7L8S5	288 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	MRPL10	Q7Z7H8	261 aa	Known RBP	11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	FERMT3	Q86UX7	667 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	TPH2	Q8IWU9	490 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	TCP11	Q8WWU5	503 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	TNFRSF25	Q93038	417 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	RIPOR3	Q96MK2	946 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	NECTIN4	Q96NY8	510 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	NAP1L4	Q99733	375 aa	Known RBP	11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	EIF2A	Q9BY44	585 aa	Known RBP	11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	ZSWIM4	Q9H7M6	989 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	XPNPEP1	Q9NQW7	623 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	DZANK1	Q9NVP4	752 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	PPME1	Q9Y570	386 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	IRAK3	Q9Y616	596 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	ZDBF2	Q9HCK1	2354 aa		11.75	□□□□□ -0.53
LSM4-205	ENST00000597776	GAS2	O43903	313 aa	Known RBP	11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	TSPAN1	O60635	241 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	ERLIN2	O94905	339 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	SLITRK3	O94933	977 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	BAG4	O95429	457 aa	Known RBP	11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	BRD1	O95696	1058 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	ASGR2	P07307	311 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	MTHFR	P42898	656 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	TCF15	Q12870	199 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	ME3	Q16798	604 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	KIAA1841	Q6NSI8	718 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	TMC5	Q6UXY8	1006 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	CABP7	Q86V35	215 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	EXOC8	Q8IYI6	725 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	SLFN12	Q8IYM2	578 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	SMG8	Q8ND04	991 aa	Known RBP	11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	WASF1	Q92558	559 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	CPB2	Q96IY4	423 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	MTR	Q99707	1265 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	EIF2AK1	Q9BQI3	630 aa	Known RBP	11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	RNF39	Q9H2S5	420 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	HES2	Q9Y543	173 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	IPP	Q9Y573	584 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776	CNTNAP2	Q9UHC6	1331 aa		11.74	□□□□□ -0.53
LSM4-205	ENST00000597776		A0A087WWV3	80 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	CARNS1	A5YM72	827 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	C2CD2L	O14523	706 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	NRP1	O14786	923 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	ASAP2	O43150	1006 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	JAK2	O60674	1132 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	CNP	P09543	421 aa	Known RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	NCL	P19338	710 aa	Known RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	MLH1	P40692	756 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	PTPN5	P54829	565 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	ANAPC15	P60006	121 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	MTMR3	Q13615	1198 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	CAPS	Q13938	189 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	GIT2	Q14161	759 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	ANKRD1	Q15327	319 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	CALCRL	Q16602	461 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	USP34	Q70CQ2	3546 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	TDRD5	Q8NAT2	981 aa	Known RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	NSUN7	Q8NE18	718 aa	Known RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	ASAP3	Q8TDY4	903 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	GTF3C6	Q969F1	213 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	KLHL5	Q96PQ7	755 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	FAM193B	Q96PV7	902 aa	Predicted RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	GAD1	Q99259	594 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	TMEM175	Q9BSA9	504 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	APOL6	Q9BWW8	343 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	BRMS1	Q9HCU9	246 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	FAM86C1	Q9NVL1	165 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	MARCH5	Q9NX47	278 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	LIMD1	Q9UGP4	676 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	DBR1	Q9UK59	544 aa	Known RBP	11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	PCDHA12	Q9UN75	941 aa		11.73	□□□□□ -0.53
LSM4-205	ENST00000597776	SORCS3	Q9UPU3	1222 aa		11.73	□□□□□ -0.53

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