RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	GOLGA8IP	A6NC78	632 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	GOLGA8J	A6NMD2	632 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	CCDC169	A6NNP5	214 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	VCAM1	P19320	739 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	TTC27	Q6P3X3	843 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	CYB5D1	Q6P9G0	228 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	LXN	Q9BS40	222 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	ACTR5	Q9H9F9	607 aa	Predicted RBP	18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	CD2AP	Q9Y5K6	639 aa		18.43	■□□□□ 0.54
VPS53-215	ENST00000573028	PRELP	P51888	382 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	LRRC14	Q15048	493 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	SEL1L2	Q5TEA6	688 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PPM1K	Q8N3J5	372 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	CCDC197	Q8NCU1	140 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	ZKSCAN4	Q969J2	545 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	TLCD1	Q96CP7	247 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	POP1	Q99575	1024 aa	Known RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	MTFR1L	Q9H019	292 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	CNOT10	Q9H9A5	744 aa	Known RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	MLXIPL	Q9NP71	852 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	TTC7A	Q9ULT0	858 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	STK24	Q9Y6E0	443 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	HGS	O14964	777 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	CHUK	O15111	745 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	RASSF9	O75901	435 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	ERMARD	Q5T6L9	678 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	LRRC34	Q8IZ02	419 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	ZDHHC14	Q8IZN3	488 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	NACC1	Q96RE7	527 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	FIZ1	Q96SL8	496 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	MYCBP	Q99417	103 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	CBWD1	Q9BRT8	395 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	MKNK1	Q9BUB5	465 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	FAM129A	Q9BZQ8	928 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	UNC45A	Q9H3U1	944 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	TUFT1	Q9NNX1	390 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	MTRF1L	Q9UGC7	380 aa	Known RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	SRRM3	A6NNA2	597 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	ANKRD63	C9JTQ0	380 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PHF2	O75151	1096 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PSMD10	O75832	226 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	SGPL1	O95470	568 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PYGM	P11217	842 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	ADRA2B	P18089	450 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PPP3CA	Q08209	521 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	SNX1	Q13596	522 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	PHLDB2	Q86SQ0	1253 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	FUK	Q8N0W3	1084 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	DYDC1	Q8WWB3	177 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	SYT11	Q9BT88	431 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	FRMD4A	Q9P2Q2	1039 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	GGA2	Q9UJY4	613 aa		18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	EPB41L3	Q9Y2J2	1087 aa	Predicted RBP	18.42	■□□□□ 0.54
VPS53-215	ENST00000573028	FAM187A	A6NFU0	413 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	DHX34	Q14147	1143 aa	Known RBP	18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	RRP1B	Q14684	758 aa	Known RBP	18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	PPP1R7	Q15435	360 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	FAM133B	Q5BKY9	247 aa	Known RBP	18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	RHOT2	Q8IXI1	618 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	ACER1	Q8TDN7	264 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	ZDHHC15	Q96MV8	337 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	POLR2M	P0CAP2	368 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	STAT2	P52630	851 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	GPC5	P78333	572 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	CETN1	Q12798	172 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	SNCB	Q16143	134 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	PARP9	Q8IXQ6	854 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	CCDC127	Q96BQ5	260 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	GRHL1	Q9NZI5	618 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	DIS3	Q9Y2L1	958 aa	Known RBP	18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	RPTOR	Q8N122	1335 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	SYNGAP1	Q96PV0	1343 aa		18.41	■□□□□ 0.54
VPS53-215	ENST00000573028	ACSL3	O95573	720 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	MSL1	Q68DK7	614 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	HIBCH	Q6NVY1	386 aa	Predicted RBP	18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	CSRNP1	Q96S65	589 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	ZSWIM1	Q9BR11	485 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	TXLNGY	Q9BZA5	131 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	FOXO6	A8MYZ6	492 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	CYP26A1	O43174	497 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	PAEP	P09466	180 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	DRP2	Q13474	957 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	PPP2R5A	Q15172	486 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	PPP2R5E	Q16537	467 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	ANKS4B	Q8N8V4	417 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	GMCL1	Q96IK5	515 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	FRMPD4	Q14CM0	1322 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	TMEM150B	A6NC51	233 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	TRIM37	O94972	964 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	CHRNA3	P32297	505 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	VPS41	P49754	854 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	VAMP7	P51809	220 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	TRIP13	Q15645	432 aa	Predicted RBP	18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	CEP55	Q53EZ4	464 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	PCDHB18P	Q96TA0	734 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	ATAD5	Q96QE3	1844 aa		18.4	■□□□□ 0.54
VPS53-215	ENST00000573028	RASGRF2	O14827	1237 aa		18.39	■□□□□ 0.53
VPS53-215	ENST00000573028	PTGIR	P43119	386 aa		18.39	■□□□□ 0.53
VPS53-215	ENST00000573028	MAP2K1	Q02750	393 aa	Predicted RBP	18.39	■□□□□ 0.53
VPS53-215	ENST00000573028	ADCY1	Q08828	1119 aa		18.39	■□□□□ 0.53

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