RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 ATP8B1O43520 1251 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 PPFIA4O75335 1185 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 MAFO75444 373 aaPredicted RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 ERLIN1O75477 346 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 CNMDO75829 334 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 ALDH1A1P00352 501 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 CTAGE8P0CG41 777 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 TAL1P17542 331 aaPredicted RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 POLR2AP24928 1970 aaKnown RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 HOXD13P35453 343 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 SOX5P35711 763 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 TCF7P36402 384 aaPredicted RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 ARL2P36404 184 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 MAGEA1P43355 309 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 CYP2J2P51589 502 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 NPEPPSP55786 919 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 YWHAEP62258 255 aaKnown RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 TNFAIP2Q03169 654 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 NCBP1Q09161 790 aaKnown RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 MOGSQ13724 837 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 GRB14Q14449 540 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 TARBP2Q15633 366 aaKnown RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 MAPK6Q16659 721 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 MAP9Q49MG5 647 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 WDR44Q5JSH3 913 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 ZNF569Q5MCW4 686 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 UTP14CQ5TAP6 766 aaKnown RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 SPRYD7Q5W111 196 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 IQSEC1Q6DN90 963 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 GPAT2Q6NUI2 795 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 CTAGE6Q86UF2 777 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 CTAGE4Q8IX94 777 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 RHOT2Q8IXI1 618 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 C17orf53Q8N3J3 647 aaPredicted RBP8.16□□□□□ -1.1
VPS39-204ENST00000561818 RABGGTAQ92696 567 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 HHIPL1Q96JK4 782 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 SPATA33Q96N06 139 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 NT5C1BQ96P26 610 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 KATNAL1Q9BW62 490 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 PLVAPQ9BX97 442 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 COQ4Q9Y3A0 265 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 Q9Y3F1 56 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 PCDHA13Q9Y5I0 950 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 SAR1BQ9Y6B6 198 aa8.16□□□□□ -1.1
VPS39-204ENST00000561818 SMCHD1A6NHR9 2005 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 MYH9P35579 1960 aaKnown RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 KIAA1217Q5T5P2 1943 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 SOWAHBA6NEL2 793 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 F8VZ95 297 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 SLC16A4O15374 487 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 RRP9O43818 475 aaKnown RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 ADCY3O60266 1144 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 ZNF862O60290 1169 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 KPNA6O60684 536 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 TOM1L1O75674 476 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 GABBR2O75899 941 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 TXNP10599 105 aaKnown RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 PAFAH1B1P43034 410 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 PHKA2P46019 1235 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 GPC3P51654 580 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 JAM2P57087 298 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 CLDN10P78369 228 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 CNTN2Q02246 1040 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 GCNT1Q02742 428 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 KCNMA1Q12791 1236 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 DGKZQ13574 1117 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 PSMD6Q15008 389 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 NAB2Q15742 525 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 UGCGQ16739 394 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 ASTE1Q2TB18 679 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 ZNF792Q3KQV3 632 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 MTERF2Q49AM1 385 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 ZC2HC1CQ53FD0 456 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 WDR78Q5VTH9 848 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 PAPD7Q5XG87 772 aaKnown RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 CDCA2Q69YH5 1023 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 CCDC62Q6P9F0 684 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 TRIM72Q6ZMU5 477 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 ARMCX2Q7L311 632 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 SRGAP1Q7Z6B7 1085 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 PLEKHH3Q7Z736 793 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 DPP9Q86TI2 863 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 NT5DC4Q86YG4 428 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 IFNLR1Q8IU57 520 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 GLIS3Q8NEA6 775 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 FBXL13Q8NEE6 735 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 CCDC102AQ96A19 550 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 CLMNQ96JQ2 1002 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 MFSD14AQ96MC6 490 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 NAP1L3Q99457 506 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 GPR20Q99678 358 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 INO80BQ9C086 356 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 INTS2Q9H0H0 1204 aaKnown RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 ACBD3Q9H3P7 528 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 C1orf112Q9NSG2 853 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 PRMT7Q9NVM4 692 aaPredicted RBP8.15□□□□□ -1.1
VPS39-204ENST00000561818 ARHGAP20Q9P2F6 1191 aa8.15□□□□□ -1.1
VPS39-204ENST00000561818 ARID2Q68CP9 1835 aa8.15□□□□□ -1.11
VPS39-204ENST00000561818 LRRC37A2A6NM11 1700 aa8.15□□□□□ -1.11
VPS39-204ENST00000561818 IGKV6-21A0A0C4DH24 114 aa8.14□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms