RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 RAD21O60216 631 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 RANBP6O60518 1105 aaKnown RBP10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 LYNP07948 512 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 BCRP11274 1271 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 IDO1P14902 403 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 MGAT5Q09328 741 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 MAP7Q14244 749 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 KPNB1Q14974 876 aaKnown RBP10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 ZNF658Q5TYW1 1059 aaPredicted RBP10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 HHIPL2Q6UWX4 724 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 GPIHBP1Q8IV16 184 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 NRG4Q8WWG1 115 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 PPP2R3CQ969Q6 453 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 TMEM237Q96Q45 408 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 CENPKQ9BS16 269 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 DENND2DQ9H6A0 471 aaPredicted RBP10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 PLAGL2Q9UPG8 496 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 USP20Q9Y2K6 914 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 ATP8A1Q9Y2Q0 1164 aa10.18□□□□□ -0.78
CTNNA1-243ENST00000540387 TMEM247A6NEH6 219 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 SMIM23A6NLE4 172 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 USP17L12C9JPN9 530 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 USP17L21D6R901 530 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 FZD9O00144 591 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 PRPF3O43395 683 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 CD97P48960 835 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 PMS1P54277 932 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 GSTM4Q03013 218 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 EVX2Q03828 476 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 TTLL12Q14166 644 aaPredicted RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 CCDC6Q16204 474 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 PKN1Q16512 942 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 SCUBE1Q8IWY4 988 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 LRRC43Q8N309 656 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 STAG2Q8N3U4 1231 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 CATSPER2Q96P56 530 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 MRIQ9BWK5 157 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 UTP6Q9NYH9 597 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 LARSQ9P2J5 1176 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 KCNJ14Q9UNX9 436 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 A0A1W2PQJ5 194 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 RGS16O15492 202 aaPredicted RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 LMNAP02545 664 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 MMP1P03956 469 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 LMNB1P20700 586 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 HNRNPH3P31942 346 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 EHHADHQ08426 723 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 NTRK3Q16288 839 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 DAB2IPQ5VWQ8 1189 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 RALYLQ86SE5 291 aaKnown RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 SPATA24Q86W54 205 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 MAPKAPK5Q8IW41 473 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 NCOA7Q8NI08 942 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 NAT14Q8WUY8 206 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 HAUS1Q96CS2 278 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 ZDHHC15Q96MV8 337 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 TUBGCP2Q9BSJ2 902 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 UBA5Q9GZZ9 404 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 USP40Q9NVE5 1235 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 ARHGEF38Q9NXL2 777 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 MAGEC2Q9UBF1 373 aaPredicted RBP10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 EFR3BQ9Y2G0 817 aa10.17□□□□□ -0.78
CTNNA1-243ENST00000540387 A6NJR5 290 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 USP17L8P0C7I0 530 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 SLC1A4P43007 532 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 NR5A1Q13285 461 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 LRRC14Q15048 493 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 GSTA3Q16772 222 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 MEI1Q5TIA1 1274 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 CDC42EP5Q6NZY7 148 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 KLC3Q6P597 504 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 PALB2Q86YC2 1186 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 TBC1D10CQ8IV04 446 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 NKX2-3Q8TAU0 364 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 SCFD2Q8WU76 684 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 RSPH1Q8WYR4 309 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 ABHD8Q96I13 439 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 PRMT6Q96LA8 375 aaPredicted RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 NR1H4Q96RI1 486 aaPredicted RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 MPHOSPH6Q99547 160 aaKnown RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 CCDC28BQ9BUN5 200 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 TBC1D10AQ9BXI6 508 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 TXLNGYQ9BZA5 131 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 DHX36Q9H2U1 1008 aaKnown RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 EPB41L4BQ9H329 900 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 MCM9Q9NXL9 1143 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 SERPINA10Q9UK55 444 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 TACC3Q9Y6A5 838 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 GJA3Q9Y6H8 435 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 MYO3BQ8WXR4 1341 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 CCDC169A6NNP5 214 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 CYP2D6P10635 497 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 VAV1P15498 845 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 EPHB2P29323 1055 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 PSMD7P51665 324 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 ADARP55265 1226 aaKnown RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 EIF6P56537 245 aaKnown RBP10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 TNIP1Q15025 636 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 GPR162Q16538 588 aa10.16□□□□□ -0.78
CTNNA1-243ENST00000540387 USH1GQ495M9 461 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms