RNA–Protein interactions for RNA: ENST00000508501.5

LIMCH1-208, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,054 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-208ENST00000508501 SNPHO15079 494 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 TUBA4AP68366 448 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 WAPLQ7Z5K2 1190 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 DENND6AQ8IWF6 608 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 CYGBQ8WWM9 190 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 RBM17Q96I25 401 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 CDHR1Q96JP9 859 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 VCPKMTQ9H867 229 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 LRCH1Q9Y2L9 728 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 GRIN2BQ13224 1484 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 PVALEFA0A1B0GWK0 134 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 COBLO75128 1261 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 KRT20P35900 424 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 EIF2B2P49770 351 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 KIF22Q14807 665 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 PTGISQ16647 500 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 HIF1AQ16665 826 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 PNMA1Q8ND90 353 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 NSUN7Q8NE18 718 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 OTULINQ96BN8 352 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 GPR108Q9NPR9 543 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 SFMBT1Q9UHJ3 866 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 DNAJC12Q9UKB3 198 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 NSFL1CQ9UNZ2 370 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 B2RBV5 119 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 CIITAP33076 1130 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 TALDO1P37837 337 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 SGSM1Q2NKQ1 1148 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 ASPRV1Q53RT3 343 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 C4orf22Q6V702 233 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 RHOT1Q8IXI2 618 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 ATL2Q8NHH9 583 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 TSPAN17Q96FV3 270 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 DDX39AO00148 427 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 CHL1O00533 1208 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 RGS20O76081 388 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 ENO1P06733 434 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 IMPDH2P12268 514 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 NQO1P15559 274 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 KCNA1Q09470 495 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 EIF4A2Q14240 407 aaKnown RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 TRIP13Q15645 432 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 RSBN1Q5VWQ0 802 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 FBXO11Q86XK2 927 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 CDC26Q8NHZ8 85 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 PIGOQ8TEQ8 1089 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 PARD3BQ8TEW8 1205 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 GPR101Q96P66 508 aaPredicted RBP11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 KIAA1024Q9UPX6 916 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 TNKSO95271 1327 aa11.87□□□□□ -0.51
LIMCH1-208ENST00000508501 KLRF2D3W0D1 207 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 KLHL41O60662 606 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CHN1P15882 459 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 IFNAR1P17181 557 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ITGA1P56199 1179 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 WASHC2DQ5SRD0 308 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 KDM7AQ6ZMT4 941 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 NANOGNBQ7Z5D8 188 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 RYBPQ8N488 228 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 JDP2Q8WYK2 163 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 INPP5DQ92835 1189 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 PHF23Q9BUL5 403 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CEP44Q9C0F1 390 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 PSMC3IPQ9P2W1 217 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 IP6K2Q9UHH9 426 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 RTCBQ9Y3I0 505 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 SNAPC4Q5SXM2 1469 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CFAP99D6REC4 459 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 MAFGO15525 162 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ITGA6P23229 1130 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 POLGP54098 1239 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 Q4G0T1 1027 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 KRT73Q86Y46 540 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ZCCHC7Q8N3Z6 543 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 C19orf18Q8NEA5 215 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 PPP2R3CQ969Q6 453 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 LRRC59Q96AG4 307 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 THTPAQ9BU02 230 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 SNX12Q9UMY4 172 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ABCC4O15439 1325 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ACEP12821 1306 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 TRAPPC8Q9Y2L5 1435 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 EIF2AK4Q9P2K8 1649 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 GOLGA8SH3BPF8 625 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 IGF2BP3O00425 579 aaKnown RBP eCLIP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 AHCYL1O43865 530 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 UBTFL6P0CB48 400 aaPredicted RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ADD1P35611 737 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 DYNLT1P63172 113 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 CTDSPL2Q05D32 466 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 KDSRQ06136 332 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 DMPKQ09013 629 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 MTHFSDQ2M296 383 aaKnown RBP11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 ARMC4Q5T2S8 1044 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 TTC23LQ6PF05 361 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 NSMFQ6X4W1 530 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 NLRP9Q7RTR0 991 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 FAM45AQ8TCE6 357 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 RFFLQ8WZ73 363 aa11.86□□□□□ -0.51
LIMCH1-208ENST00000508501 VPS50Q96JG6 964 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms