RNA–Protein interactions for RNA: ENST00000494993.1

HDDC3-203, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,220 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-203ENST00000494993 ZNF280BQ86YH2 543 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 TMEM87AQ8NBN3 555 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 URGCPQ8TCY9 931 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 DYDC2Q96IM9 177 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 DZANK1Q9NVP4 752 aa24.67■■□□□ 1.54
HDDC3-203ENST00000494993 ORC3Q9UBD5 711 aaPredicted RBP24.67■■□□□ 1.54
HDDC3-203ENST00000494993 B4GALT3O60512 393 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 HOXA11P31270 313 aaPredicted RBP24.66■■□□□ 1.54
HDDC3-203ENST00000494993 RARS2Q5T160 578 aaKnown RBP24.66■■□□□ 1.54
HDDC3-203ENST00000494993 IER5LQ5T953 404 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 SLFN12Q8IYM2 578 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 TCP11Q8WWU5 503 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 WASF1Q92558 559 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 RIPOR3Q96MK2 946 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 ZSWIM4Q9H7M6 989 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 RSAD1Q9HA92 442 aa24.66■■□□□ 1.54
HDDC3-203ENST00000494993 CNTNAP2Q9UHC6 1331 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 FAM205CA6NFA0 338 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 ASAP2O43150 1006 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 BAG4O95429 457 aaKnown RBP24.65■■□□□ 1.54
HDDC3-203ENST00000494993 EPCAMP16422 314 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 CTTNQ14247 550 aaKnown RBP24.65■■□□□ 1.54
HDDC3-203ENST00000494993 XKR9Q5GH70 373 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 UBXN11Q5T124 520 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 FERMT3Q86UX7 667 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 C12orf76Q8N812 135 aaPredicted RBP24.65■■□□□ 1.54
HDDC3-203ENST00000494993 SLC22A17Q8WUG5 538 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 PRRX2Q99811 253 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 VN1R3Q9BXE9 311 aa24.65■■□□□ 1.54
HDDC3-203ENST00000494993 C2CD4DB7Z1M9 353 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 DDHD2O94830 711 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 WEE2P0C1S8 567 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 KRT2P35908 639 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 AK2P54819 239 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 CYP4A11Q02928 519 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 NR5A1Q13285 461 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 ANKRD1Q15327 319 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 KIAA1841Q6NSI8 718 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 RNF149Q8NC42 400 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 MTRQ99707 1265 aa24.64■■□□□ 1.54
HDDC3-203ENST00000494993 PLXNA3P51805 1871 aa24.64■■□□□ 1.53
HDDC3-203ENST00000494993 ZBTB39O15060 712 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 AFF1P51825 1210 aaKnown RBP24.63■■□□□ 1.53
HDDC3-203ENST00000494993 PTPN5P54829 565 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 ANAPC15P60006 121 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 PTPN14Q15678 1187 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 KREMEN2Q8NCW0 462 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 TNFRSF25Q93038 417 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 FAM193BQ96PV7 902 aaPredicted RBP24.63■■□□□ 1.53
HDDC3-203ENST00000494993 TMEM175Q9BSA9 504 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 KANSL3Q9P2N6 904 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 STK39Q9UEW8 545 aa24.63■■□□□ 1.53
HDDC3-203ENST00000494993 FDPSP14324 419 aaKnown RBP24.62■■□□□ 1.53
HDDC3-203ENST00000494993 NCLP19338 710 aaKnown RBP24.62■■□□□ 1.53
HDDC3-203ENST00000494993 KANK3Q6NY19 840 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 PPFIBP1Q86W92 1011 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 TPH2Q8IWU9 490 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 BRMS1Q9HCU9 246 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 XPNPEP1Q9NQW7 623 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 SORCS3Q9UPU3 1222 aa24.62■■□□□ 1.53
HDDC3-203ENST00000494993 MTCL1Q9Y4B5 1905 aaKnown RBP24.61■■□□□ 1.53
HDDC3-203ENST00000494993 ERLIN2O94905 339 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 SLITRK3O94933 977 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 VCPP55072 806 aaKnown RBP24.61■■□□□ 1.53
HDDC3-203ENST00000494993 MXD4Q14582 209 aaPredicted RBP24.61■■□□□ 1.53
HDDC3-203ENST00000494993 ATAT1Q5SQI0 421 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 CABP7Q86V35 215 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 SMG8Q8ND04 991 aaKnown RBP24.61■■□□□ 1.53
HDDC3-203ENST00000494993 CNNM3Q8NE01 707 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 EIF2AK1Q9BQI3 630 aaKnown RBP24.61■■□□□ 1.53
HDDC3-203ENST00000494993 FAN1Q9Y2M0 1017 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 CACNA1HO95180 2353 aa24.61■■□□□ 1.53
HDDC3-203ENST00000494993 NRP1O14786 923 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 POMCP01189 267 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 ALDH2P05091 517 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 AXLP30530 894 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 PTENP60484 403 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 TCF15Q12870 199 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 MTMR3Q13615 1198 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 PCBP1Q15365 356 aaKnown RBP eCLIP24.6■■□□□ 1.53
HDDC3-203ENST00000494993 UBALD2Q8IYN6 164 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 NECAB1Q8N987 351 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 TDRD5Q8NAT2 981 aaKnown RBP24.6■■□□□ 1.53
HDDC3-203ENST00000494993 KLHL5Q96PQ7 755 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 EMILIN2Q9BXX0 1053 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 UBN1Q9NPG3 1134 aa24.6■■□□□ 1.53
HDDC3-203ENST00000494993 DBR1Q9UK59 544 aaKnown RBP24.6■■□□□ 1.53
HDDC3-203ENST00000494993 TSPAN1O60635 241 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 LYPLA2O95372 231 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 LARGE1O95461 756 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 BRD1O95696 1058 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 SSBP05455 408 aaKnown RBP eCLIP24.59■■□□□ 1.53
HDDC3-203ENST00000494993 ITGA4P13612 1032 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 AVPR2P30518 371 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 CALCRLQ16602 461 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 ME3Q16798 604 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 IFNLR1Q8IU57 520 aaPredicted RBP24.59■■□□□ 1.53
HDDC3-203ENST00000494993 ZDHHC14Q8IZN3 488 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 GTF3C6Q969F1 213 aa24.59■■□□□ 1.53
HDDC3-203ENST00000494993 CCDC51Q96ER9 411 aa24.59■■□□□ 1.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms