RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 DNAJB4Q9UDY4 337 aa13.69□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 KMT2EQ8IZD2 1858 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TMEM221A6NGB7 291 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 M0R296 226 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ZC3H11AO75152 810 aaKnown RBP eCLIP13.68□□□□□ -0.222e-6■■■■■ 41.7
MSH5-SAPCD1-205ENST00000476085 SRGAP2CP0DJJ0 459 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 KRT2P35908 639 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SLC11A1P49279 550 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PTENP60484 403 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NHLH1Q02575 133 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ITIH3Q06033 890 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ST3GAL1Q11201 340 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 GIT2Q14161 759 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CTTNQ14247 550 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 EMC2Q15006 297 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PCBP1Q15365 356 aaKnown RBP eCLIP13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 LONRF3Q496Y0 759 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SMG8Q8ND04 991 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TCP11Q8WWU5 503 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PGBD4Q96DM1 585 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 EIF2AK1Q9BQI3 630 aaKnown RBP13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CDH22Q9UJ99 828 aa13.68□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CNTNAP2Q9UHC6 1331 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 USP34Q70CQ2 3546 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 BTBD18B2RXH4 712 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 BAG4O95429 457 aaKnown RBP13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NCLP19338 710 aaKnown RBP13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ARL2P36404 184 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SIGLEC14Q08ET2 396 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 AMHR2Q16671 573 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TPRNQ4KMQ1 711 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 XKR9Q5GH70 373 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NCAPH2Q6IBW4 605 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RNF149Q8NC42 400 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 AUTS2Q8WXX7 1259 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TMEM175Q9BSA9 504 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NFKBIZQ9BYH8 718 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 POMKQ9H5K3 350 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ANKEF1Q9NU02 776 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PPP4R2Q9NY27 417 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 KANSL3Q9P2N6 904 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PCDHA12Q9UN75 941 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DENND4AQ7Z401 1863 aa13.67□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TDRD15B5MCY1 1934 aaKnown RBP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 C2orf16Q68DN1 1984 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 XRCC6P12956 609 aaKnown RBP eCLIP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 AXLP30530 894 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CYP4A11Q02928 519 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MXD4Q14582 209 aaPredicted RBP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PTPN14Q15678 1187 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PTPN21Q16825 1174 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ERICH6BQ5W0A0 696 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TPH2Q8IWU9 490 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RNF168Q8IYW5 571 aaPredicted RBP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PBXIP1Q96AQ6 731 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NECTIN4Q96NY8 510 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MTRQ99707 1265 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 APOL5Q9BWW9 433 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RNF39Q9H2S5 420 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TTC12Q9H892 705 aaPredicted RBP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RSAD1Q9HA92 442 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 STK39Q9UEW8 545 aa13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MTCL1Q9Y4B5 1905 aaKnown RBP13.66□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 TSPAN1O60635 241 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 JAK2O60674 1132 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DGAT1O75907 488 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 PAPLNO95428 1278 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ALDH2P05091 517 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 SPATA31C1P0DKV0 1188 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 EPCAMP16422 314 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 RARRES1P49788 294 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MBTD1Q05BQ5 628 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DSC1Q08554 894 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 BMS1Q14692 1282 aaKnown RBP13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CALCRLQ16602 461 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 IER5LQ5T953 404 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 KIAA1841Q6NSI8 718 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DIS3L2Q8IYB7 885 aaKnown RBP13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 COLGALT2Q8IYK4 626 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 FBXL6Q8N531 539 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CNNM3Q8NE01 707 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 GSTCDQ8NEC7 633 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 FEZF2Q8TBJ5 459 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 CCDC51Q96ER9 411 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 EIF2AQ9BY44 585 aaKnown RBP13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 UBN1Q9NPG3 1134 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 BMP2KQ9NSY1 1161 aaPredicted RBP13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 DZANK1Q9NVP4 752 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 MIOSQ9NXC5 875 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 INPP5FQ9Y2H2 1132 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 NR2E1Q9Y466 385 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 IPPQ9Y573 584 aa13.65□□□□□ -0.22
MSH5-SAPCD1-205ENST00000476085 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 C2CD4DB7Z1M9 353 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 NRP1O14786 923 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MARCH6O60337 910 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 SEC24BO95487 1268 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 GLRA2P23416 452 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 MTHFRP42898 656 aa13.64□□□□□ -0.23
MSH5-SAPCD1-205ENST00000476085 CLCN4P51793 760 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms