RNA–Protein interactions for RNA: ENST00000466591.1

COL7A1-206, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 778 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-206ENST00000466591 ITGA4P13612 1032 aa19.49■□□□□ 0.71
COL7A1-206ENST00000466591 CBX2Q14781 532 aaPredicted RBP19.49■□□□□ 0.71
COL7A1-206ENST00000466591 NOTUMQ6P988 496 aa19.49■□□□□ 0.71
COL7A1-206ENST00000466591 MRPL43Q8N983 215 aaKnown RBP19.49■□□□□ 0.71
COL7A1-206ENST00000466591 UBN1Q9NPG3 1134 aa19.49■□□□□ 0.71
COL7A1-206ENST00000466591 ANKEF1Q9NU02 776 aa19.49■□□□□ 0.71
COL7A1-206ENST00000466591 C2orf71A6NGG8 1288 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 ZBTB39O15060 712 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 USO1O60763 962 aaKnown RBP19.48■□□□□ 0.71
COL7A1-206ENST00000466591 OFD1O75665 1012 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 POMCP01189 267 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 SP100P23497 879 aaPredicted RBP19.48■□□□□ 0.71
COL7A1-206ENST00000466591 SPIRE1Q08AE8 756 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 PCBP1Q15365 356 aaKnown RBP eCLIP19.48■□□□□ 0.71
COL7A1-206ENST00000466591 MAEAQ7L5Y9 396 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 VN1R2Q8NFZ6 395 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 TNFRSF25Q93038 417 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 IGSF21Q96ID5 467 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 APOL6Q9BWW8 343 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 NRDE2Q9H7Z3 1164 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 STK39Q9UEW8 545 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 NOL7Q9UMY1 257 aaKnown RBP19.48■□□□□ 0.71
COL7A1-206ENST00000466591 FAN1Q9Y2M0 1017 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 NR2E1Q9Y466 385 aa19.48■□□□□ 0.71
COL7A1-206ENST00000466591 POTEMA6NI47 508 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 LRRIQ4A6NIV6 560 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 MEIS3P2A8K0S8 358 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 ALDH2P05091 517 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 SSBP05455 408 aaKnown RBP eCLIP19.47■□□□□ 0.71
COL7A1-206ENST00000466591 AXLP30530 894 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 HERC4Q5GLZ8 1057 aaPredicted RBP19.47■□□□□ 0.71
COL7A1-206ENST00000466591 DDX53Q86TM3 631 aaKnown RBP19.47■□□□□ 0.71
COL7A1-206ENST00000466591 PIGOQ8TEQ8 1089 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 AUTS2Q8WXX7 1259 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 CCDC51Q96ER9 411 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 MFSD14AQ96MC6 490 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 EMILIN2Q9BXX0 1053 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 MINDY3Q9H8M7 445 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 HCFC2Q9Y5Z7 792 aa19.47■□□□□ 0.71
COL7A1-206ENST00000466591 GALTP07902 379 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 HMGN5P82970 282 aaKnown RBP19.46■□□□□ 0.71
COL7A1-206ENST00000466591 TMEM184AQ6ZMB5 413 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 ZBTB8OSQ8IWT0 167 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 CPB2Q96IY4 423 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 ZSCAN31Q96LW9 406 aaPredicted RBP19.46■□□□□ 0.71
COL7A1-206ENST00000466591 RIPOR3Q96MK2 946 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 LLPHQ9BRT6 129 aaKnown RBP19.46■□□□□ 0.71
COL7A1-206ENST00000466591 POLR3FQ9H1D9 316 aaPredicted RBP19.46■□□□□ 0.71
COL7A1-206ENST00000466591 DZANK1Q9NVP4 752 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 DNAJB4Q9UDY4 337 aa19.46■□□□□ 0.71
COL7A1-206ENST00000466591 ARIH1Q9Y4X5 557 aaPredicted RBP19.46■□□□□ 0.71
COL7A1-206ENST00000466591 LOC730098B7Z3J9 87 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 TSPAN1O60635 241 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 CLASP2O75122 1294 aaKnown RBP19.45■□□□□ 0.7
COL7A1-206ENST00000466591 LYPLA2O95372 231 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 CTSAP10619 480 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 OR1G1P47890 313 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 SLC11A1P49279 550 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 RBM25P49756 843 aaKnown RBP19.45■□□□□ 0.7
COL7A1-206ENST00000466591 PTENP60484 403 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 ITIH3Q06033 890 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 RARS2Q5T160 578 aaKnown RBP19.45■□□□□ 0.7
COL7A1-206ENST00000466591 ELMSAN1Q6PJG2 1045 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 AGMOQ6ZNB7 445 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 CABP7Q86V35 215 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 PPFIBP1Q86W92 1011 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 SUGP1Q8IWZ8 645 aaKnown RBP19.45■□□□□ 0.7
COL7A1-206ENST00000466591 NECTIN4Q96NY8 510 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 HSD17B14Q9BPX1 270 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 TMEM175Q9BSA9 504 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 ZBP1Q9H171 429 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 PRG3Q9Y2Y8 225 aaPredicted RBP19.45■□□□□ 0.7
COL7A1-206ENST00000466591 IPPQ9Y573 584 aa19.45■□□□□ 0.7
COL7A1-206ENST00000466591 SEC24BO95487 1268 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 URODP06132 367 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 OR52Z1P0C646 297 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 NCLP19338 710 aaKnown RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 KLRC2P26717 231 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 RARRES1P49788 294 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 CAPSQ13938 189 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 ZNF174Q15697 407 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 HAUS3Q68CZ6 603 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 KIAA1841Q6NSI8 718 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 MRPL10Q7Z7H8 261 aaKnown RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 TMEM173Q86WV6 379 aaPredicted RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 ZNF280BQ86YH2 543 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 MCPH1Q8NEM0 835 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 EDAQ92838 391 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 NACC1Q96RE7 527 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 RPS6KC1Q96S38 1066 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 TUFT1Q9NNX1 390 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 XPNPEP1Q9NQW7 623 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 SH2B1Q9NRF2 756 aaPredicted RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 MRPL17Q9NRX2 175 aaKnown RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 DBR1Q9UK59 544 aaKnown RBP19.44■□□□□ 0.7
COL7A1-206ENST00000466591 ARID2Q68CP9 1835 aa19.44■□□□□ 0.7
COL7A1-206ENST00000466591 A0A087WWV3 80 aa19.43■□□□□ 0.7
COL7A1-206ENST00000466591 ARHGEF35A5YM69 484 aa19.43■□□□□ 0.7
COL7A1-206ENST00000466591 C2CD2LO14523 706 aa19.43■□□□□ 0.7
COL7A1-206ENST00000466591 XRCC6P12956 609 aaKnown RBP eCLIP19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms