RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 CELF4Q9BZC1 486 aaKnown RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 FAM49AQ9H0Q0 323 aaPredicted RBP13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 WNT16Q9UBV4 365 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 MTMR6Q9Y217 621 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 KDM3AQ9Y4C1 1321 aa13.32□□□□□ -0.28
SQSTM1-206ENST00000466342 C2orf71A6NGG8 1288 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 WDR64B1ANS9 1081 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 MARCH6O60337 910 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 CLASP2O75122 1294 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 ATP4AP20648 1035 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 SFNP31947 248 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 TMEM62Q0P6H9 643 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 NFX1Q12986 1120 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 RESTQ13127 1097 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 PPP2R5CQ13362 524 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 NBR1Q14596 966 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 SMC1AQ14683 1233 aaKnown RBP13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 ZNF174Q15697 407 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 KCNT2Q6UVM3 1135 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 SLC24A5Q71RS6 500 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 FERMT3Q86UX7 667 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 C12orf76Q8N812 135 aaPredicted RBP13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 RDM1Q8NG50 284 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 ZBTB10Q96DT7 871 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 BORCS6Q96GS4 357 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 CHAMP1Q96JM3 812 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 MTMR9Q96QG7 549 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 TMEM60Q9H2L4 133 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 UNC45AQ9H3U1 944 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 KCNK12Q9HB15 430 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 RGS18Q9NS28 235 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 VAV3Q9UKW4 847 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 SAMM50Q9Y512 469 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 PCDHB6Q9Y5E3 794 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 ARID2Q68CP9 1835 aa13.31□□□□□ -0.28
SQSTM1-206ENST00000466342 USP24Q9UPU5 2620 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 C9IYK1 514 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 CHMP2AO43633 222 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 MGEA5O60502 916 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 ADRB1P08588 477 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 PPM1AP35813 382 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 JAK3P52333 1124 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 COL9A2Q14055 689 aaPredicted RBP13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 TMEM266Q2M3C6 531 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 KANK3Q6NY19 840 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 OTOP3Q7RTS5 596 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 KIAA0319LQ8IZA0 1049 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 FAM167AQ96KS9 214 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 ADAM2Q99965 735 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 DISC1Q9NRI5 854 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 C1orf112Q9NSG2 853 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 DZANK1Q9NVP4 752 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 GABBR1Q9UBS5 961 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 CEP131Q9UPN4 1083 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 MIA3Q5JRA6 1907 aa13.3□□□□□ -0.28
SQSTM1-206ENST00000466342 DENND3A2RUS2 1198 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 KRBA1A5PL33 1030 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 PRR5-ARHGAP8B1AHC4 643 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ZBTB42B2RXF5 422 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 MAGEB2O15479 319 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 KINO60870 393 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 OR52Z1P0C646 297 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ARHGAP8P85298 464 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 VARS2Q5ST30 1063 aaKnown RBP13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ODR4Q5SWX8 454 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 LRRC55Q6ZSA7 311 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 MIER3Q7Z3K6 550 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 C1orf210Q8IVY1 113 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ZNF558Q96NG5 402 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 RTKNQ9BST9 563 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ZSCAN16Q9H4T2 348 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 TTC12Q9H892 705 aaPredicted RBP13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 ATP6V0A4Q9HBG4 840 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 NRBP2Q9NSY0 501 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 TMEM161AQ9NX61 479 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 SPG21Q9NZD8 308 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 IGSF9Q9P2J2 1179 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 PCDHA12Q9UN75 941 aa13.29□□□□□ -0.28
SQSTM1-206ENST00000466342 CHD8Q9HCK8 2581 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 DCDC2BA2VCK2 349 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 LAD1O00515 517 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 NARSO43776 548 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 C22orf31O95567 290 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 CXCL14O95715 111 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 CFHP08603 1231 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 RFX1P22670 979 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 TXKP42681 527 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 FAM189BP81408 668 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 SPIRE1Q08AE8 756 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 PTGDRQ13258 359 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 BMS1Q14692 1282 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 SPECC1Q5M775 1068 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 ZNF710Q8N1W2 664 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 C4orf32Q8N8J7 132 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 TMEM117Q9H0C3 514 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 ELAC1Q9H777 363 aaKnown RBP13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 DLGAP2Q9P1A6 1054 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 NCDNQ9UBB6 729 aa13.28□□□□□ -0.28
SQSTM1-206ENST00000466342 CDV3Q9UKY7 258 aaKnown RBP13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms