RNA–Protein interactions for RNA: ENST00000464168.5

USP4-208, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 601 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-208ENST00000464168 DKC1O60832 514 aaKnown RBP eCLIP25.3■■□□□ 1.64
USP4-208ENST00000464168 NUBP1P53384 320 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 LAMTOR4Q0VGL1 99 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 UBXN11Q5T124 520 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 TMC5Q6UXY8 1006 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 SRGAP1Q7Z6B7 1085 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 NEK8Q86SG6 692 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 CABP7Q86V35 215 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 PPFIBP1Q86W92 1011 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 EXOC8Q8IYI6 725 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 TDRD5Q8NAT2 981 aaKnown RBP25.3■■□□□ 1.64
USP4-208ENST00000464168 URGCPQ8TCY9 931 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 PSPC1Q8WXF1 523 aaKnown RBP25.3■■□□□ 1.64
USP4-208ENST00000464168 HAS1Q92839 578 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 PPME1Q9Y570 386 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 MYO15AQ9UKN7 3530 aa25.3■■□□□ 1.64
USP4-208ENST00000464168 CCDC194A0A1B0GVG4 234 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 GCFC2P16383 781 aaKnown RBP25.29■■□□□ 1.64
USP4-208ENST00000464168 RFC5P40937 340 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 C4orf19Q8IY42 314 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 PLCD3Q8N3E9 789 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 ATOH1Q92858 354 aaPredicted RBP25.29■■□□□ 1.64
USP4-208ENST00000464168 IRF2BPLQ9H1B7 796 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 RSAD1Q9HA92 442 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 PDRG1Q9NUG6 133 aa25.29■■□□□ 1.64
USP4-208ENST00000464168 PTPRZ1P23471 2315 aaPredicted RBP25.29■■□□□ 1.64
USP4-208ENST00000464168 LILRB3O75022 631 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 ALDH2P05091 517 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 EPHA7Q15375 998 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 GPR149Q86SP6 731 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 KLHL5Q96PQ7 755 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 GJB4Q9NTQ9 266 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 RGL1Q9NZL6 768 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 KANSL3Q9P2N6 904 aa25.28■■□□□ 1.64
USP4-208ENST00000464168 RIF1Q5UIP0 2472 aaKnown RBP25.28■■□□□ 1.64
USP4-208ENST00000464168 H0Y858 1186 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 TBX3O15119 743 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 GALR2O43603 387 aaPredicted RBP25.27■■□□□ 1.64
USP4-208ENST00000464168 ST18O60284 1047 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 SSBP05455 408 aaKnown RBP eCLIP25.27■■□□□ 1.64
USP4-208ENST00000464168 CNPP09543 421 aaKnown RBP25.27■■□□□ 1.64
USP4-208ENST00000464168 YWHABP31946 246 aaKnown RBP25.27■■□□□ 1.64
USP4-208ENST00000464168 CLCN4P51793 760 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 SCRN1Q12765 414 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 TMEM105Q8N8V8 129 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 OXER1Q8TDS5 423 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 LXNQ9BS40 222 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 TMEM175Q9BSA9 504 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 EMILIN2Q9BXX0 1053 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 BMP2KQ9NSY1 1161 aaPredicted RBP25.27■■□□□ 1.64
USP4-208ENST00000464168 STK39Q9UEW8 545 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 FAN1Q9Y2M0 1017 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 CNTNAP2Q9UHC6 1331 aa25.27■■□□□ 1.64
USP4-208ENST00000464168 NRP1O14786 923 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 ZBTB39O15060 712 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 ASAP2O43150 1006 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 CCNT1O60563 726 aaKnown RBP25.26■■□□□ 1.63
USP4-208ENST00000464168 DTNBO60941 627 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 POMCP01189 267 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 KLRC2P26717 231 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 EMC2Q15006 297 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 PIK3AP1Q6ZUJ8 805 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 FERMT3Q86UX7 667 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 RNF149Q8NC42 400 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 FAM193BQ96PV7 902 aaPredicted RBP25.26■■□□□ 1.63
USP4-208ENST00000464168 SFXN1Q9H9B4 322 aa25.26■■□□□ 1.63
USP4-208ENST00000464168 CDKL5O76039 1030 aa25.25■■□□□ 1.63
USP4-208ENST00000464168 NCLP19338 710 aaKnown RBP25.25■■□□□ 1.63
USP4-208ENST00000464168 SPIRE1Q08AE8 756 aa25.25■■□□□ 1.63
USP4-208ENST00000464168 OTUD6AQ7L8S5 288 aa25.25■■□□□ 1.63
USP4-208ENST00000464168 SMG8Q8ND04 991 aaKnown RBP25.25■■□□□ 1.63
USP4-208ENST00000464168 TCP11Q8WWU5 503 aa25.25■■□□□ 1.63
USP4-208ENST00000464168 DYDC2Q96IM9 177 aa25.25■■□□□ 1.63
USP4-208ENST00000464168 MRPL17Q9NRX2 175 aaKnown RBP25.25■■□□□ 1.63
USP4-208ENST00000464168 GAS2O43903 313 aaKnown RBP25.24■■□□□ 1.63
USP4-208ENST00000464168 GFRA3O60609 400 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 CTTNQ14247 550 aaKnown RBP25.24■■□□□ 1.63
USP4-208ENST00000464168 XKR9Q5GH70 373 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 EARS2Q5JPH6 523 aaKnown RBP25.24■■□□□ 1.63
USP4-208ENST00000464168 NCAPH2Q6IBW4 605 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 POTEDQ86YR6 584 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 ZSWIM4Q9H7M6 989 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 VPS13AQ96RL7 3174 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 WDR87Q6ZQQ6 2873 aa25.24■■□□□ 1.63
USP4-208ENST00000464168 STK36Q9NRP7 1315 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 MARCH6O60337 910 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 XBP1P17861 261 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 ASTLQ6HA08 431 aaPredicted RBP25.23■■□□□ 1.63
USP4-208ENST00000464168 OTOP3Q7RTS5 596 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 TAS1R1Q7RTX1 841 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 CNNM3Q8NE01 707 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 ACSF2Q96CM8 615 aaPredicted RBP25.23■■□□□ 1.63
USP4-208ENST00000464168 NAP1L4Q99733 375 aaKnown RBP25.23■■□□□ 1.63
USP4-208ENST00000464168 RNF39Q9H2S5 420 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 UBN1Q9NPG3 1134 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 XPNPEP1Q9NQW7 623 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 MARCH5Q9NX47 278 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 DMDP11532 3685 aa25.23■■□□□ 1.63
USP4-208ENST00000464168 SPTBN4Q9H254 2564 aa25.22■■□□□ 1.63
USP4-208ENST00000464168 INPPL1O15357 1258 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms