RNA–Protein interactions for RNA: ENST00000437564.5

MCF2-205, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MCF2, Length 1,988 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-205ENST00000437564 E7EVH7 732 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 INO80B-WBP1J3KQ70 363 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 DDHD2O94830 711 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 APBB3O95704 486 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PDHA1P08559 390 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 IFIT2P09913 472 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 VAV1P15498 845 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CD46P15529 392 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ZNF16P17020 682 aaPredicted RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 TMPRSS15P98073 1019 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CHRNEQ04844 493 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 FAPQ12884 760 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 LETM2Q2VYF4 491 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 TMEM95Q3KNT9 176 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 LRRC8BQ6P9F7 803 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 BTNL9Q6UXG8 535 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 UNC13DQ70J99 1090 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 RBBP8NLQ8NC74 664 aaPredicted RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 ENKURQ8TC29 256 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PANK1Q8TE04 598 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 NAT14Q8WUY8 206 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 JPH4Q96JJ6 628 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 COX4I2Q96KJ9 171 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ACAP3Q96P50 834 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PPP1R10Q96QC0 940 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 GMLQ99445 158 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 GAL3ST1Q99999 423 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CCDC77Q9BR77 488 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 MXD3Q9BW11 206 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CALN1Q9BXU9 219 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 WASH6PQ9NQA3 447 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 SDHAF3Q9NRP4 125 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.95□□□□□ -1.3
MCF2-205ENST00000437564 SAMD15Q9P1V8 674 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ASIC3Q9UHC3 531 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 TSKSQ9UJT2 592 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 RPL26L1Q9UNX3 145 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 ADAMTS8Q9UP79 889 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 USH1CQ9Y6N9 552 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 BCL9O00512 1426 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ARAP1Q96P48 1450 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 KDM4FA0A1W2PPD8 638 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 H3BQV1 296 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 FANCGO15287 622 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 TSC22D2O75157 780 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 DDX58O95786 925 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 ITGB1P05556 798 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 RETP07949 1114 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PABPC1P11940 636 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 ATF6P18850 670 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 KCNA3P22001 575 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 SERPINB3P29508 390 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ADD2P35612 726 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ARHGDIBP52566 201 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 RPP38P78345 283 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 KRT85P78386 507 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 GUCY2DQ02846 1103 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ITIH4Q14624 930 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 LEXMQ3ZCV2 418 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PPP6R3Q5H9R7 873 aaPredicted RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 TTC39AQ5SRH9 613 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ARMCX5Q6P1M9 558 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 KIF6Q6ZMV9 814 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 USP51Q70EK9 711 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CYP2U1Q7Z449 544 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 CCDC84Q86UT8 332 aaPredicted RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 IFT20Q8IY31 132 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 RNF169Q8NCN4 708 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 PJA1Q8NG27 643 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 LILRB4Q8NHJ6 448 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 GATA6Q92908 595 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 GJD4Q96KN9 370 aaPredicted RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 FBXL18Q96ME1 805 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 DBNDD1Q9H9R9 158 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 METTL5Q9NRN9 209 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 GIN1Q9NXP7 522 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 TAS2R7Q9NYW3 318 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 APOBEC2Q9Y235 224 aaKnown RBP6.95□□□□□ -1.3
MCF2-205ENST00000437564 PPP2R2CQ9Y2T4 447 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ANGPTL3Q9Y5C1 460 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 ACEP12821 1306 aa6.95□□□□□ -1.3
MCF2-205ENST00000437564 NRXN1Q9ULB1 1477 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 TK2O00142 265 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 IRS4O14654 1257 aaPredicted RBP6.94□□□□□ -1.3
MCF2-205ENST00000437564 IFIT3O14879 490 aaKnown RBP6.94□□□□□ -1.3
MCF2-205ENST00000437564 ALOX15BO15296 676 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 ICMTO60725 284 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 KATNA1O75449 491 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 GPC4O75487 556 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 TJP3O95049 919 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 EPN2O95208 641 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 CHEK2O96017 543 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 SRGNP10124 158 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 HSPA6P17066 643 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 MUTP22033 750 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 AXLP30530 894 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 CCNFP41002 786 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 CYP4F2P78329 520 aa6.94□□□□□ -1.3
MCF2-205ENST00000437564 CEBPZQ03701 1054 aaKnown RBP6.94□□□□□ -1.3
MCF2-205ENST00000437564 DHX9Q08211 1270 aaKnown RBP6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms