RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 PRSS33Q8NF86 280 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 TCP11Q8WWU5 503 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 PRPF31Q8WWY3 499 aaKnown RBP16.2■□□□□ 0.18
SDC1-204ENST00000429035 RSPH1Q8WYR4 309 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 WASF1Q92558 559 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 HAS1Q92839 578 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 RIPOR3Q96MK2 946 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 NECTIN4Q96NY8 510 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 TRAIPQ9BWF2 469 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 ADAM7Q9H2U9 754 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 DHX33Q9H6R0 707 aaKnown RBP16.2■□□□□ 0.18
SDC1-204ENST00000429035 MINDY3Q9H8M7 445 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 DZANK1Q9NVP4 752 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 TRIOO75962 3097 aa16.2■□□□□ 0.18
SDC1-204ENST00000429035 PLXNA3P51805 1871 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 CARNS1A5YM72 827 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 TBX3O15119 743 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 B4GALT3O60512 393 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 CTDNEP1O95476 244 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 POMCP01189 267 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 MTHFRP42898 656 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 ITIH3Q06033 890 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 IER5LQ5T953 404 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 KANK3Q6NY19 840 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 AGMOQ6ZNB7 445 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 BMP8AQ7Z5Y6 402 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 DDX53Q86TM3 631 aaKnown RBP16.19■□□□□ 0.18
SDC1-204ENST00000429035 CABP7Q86V35 215 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 ZNF280BQ86YH2 543 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 C4orf19Q8IY42 314 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 SLFN12Q8IYM2 578 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 FBXL6Q8N531 539 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 TDRD5Q8NAT2 981 aaKnown RBP16.19■□□□□ 0.18
SDC1-204ENST00000429035 APOL6Q9BWW8 343 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 ZSWIM4Q9H7M6 989 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 DBR1Q9UK59 544 aaKnown RBP16.19■□□□□ 0.18
SDC1-204ENST00000429035 PRG3Q9Y2Y8 225 aaPredicted RBP16.19■□□□□ 0.18
SDC1-204ENST00000429035 PPME1Q9Y570 386 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 PIEZO1Q92508 2521 aa16.19■□□□□ 0.18
SDC1-204ENST00000429035 WDFY4Q6ZS81 3184 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 INO80B-WBP1J3KQ70 363 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 C2CD2LO14523 706 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 ZBTB39O15060 712 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 GAS2O43903 313 aaKnown RBP16.18■□□□□ 0.18
SDC1-204ENST00000429035 PTPN5P54829 565 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 VCPP55072 806 aaKnown RBP16.18■□□□□ 0.18
SDC1-204ENST00000429035 GIT2Q14161 759 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 ANKRD1Q15327 319 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 CALCRLQ16602 461 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 TMC5Q6UXY8 1006 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 FERMT3Q86UX7 667 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 KREMEN2Q8NCW0 462 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 CPB2Q96IY4 423 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 CNTNAP2Q9UHC6 1331 aa16.18■□□□□ 0.18
SDC1-204ENST00000429035 ZNF623O75123 536 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 DDHD2O94830 711 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 LARGE1O95461 756 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 ITGA4P13612 1032 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 KLRC2P26717 231 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 OR1G1P47890 313 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 AFF1P51825 1210 aaKnown RBP16.17■□□□□ 0.18
SDC1-204ENST00000429035 MTMR3Q13615 1198 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 PTPN14Q15678 1187 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 UBXN11Q5T124 520 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 KIAA1841Q6NSI8 718 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 ASIC4Q96FT7 647 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 EIF2AK1Q9BQI3 630 aaKnown RBP16.17■□□□□ 0.18
SDC1-204ENST00000429035 VN1R3Q9BXE9 311 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 EMILIN2Q9BXX0 1053 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 TRIM6Q9C030 488 aaPredicted RBP16.17■□□□□ 0.18
SDC1-204ENST00000429035 FAN1Q9Y2M0 1017 aa16.17■□□□□ 0.18
SDC1-204ENST00000429035 PDGFBP01127 241 aaPredicted RBP16.16■□□□□ 0.18
SDC1-204ENST00000429035 URODP06132 367 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 ASGR2P07307 311 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 MLH1P40692 756 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 SPIRE1Q08AE8 756 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 TRIM29Q14134 588 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 TFDP1Q14186 410 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 ATAT1Q5SQI0 421 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 PHOX2BQ99453 314 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 EIF2AQ9BY44 585 aaKnown RBP16.16■□□□□ 0.18
SDC1-204ENST00000429035 SMOC2Q9H3U7 446 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 SFXN1Q9H9B4 322 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 FAM86C1Q9NVL1 165 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 SORCS3Q9UPU3 1222 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 HES2Q9Y543 173 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 IPPQ9Y573 584 aa16.16■□□□□ 0.18
SDC1-204ENST00000429035 NRP1O14786 923 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 ASAP2O43150 1006 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 NEMFO60524 1076 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 TSPAN1O60635 241 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 JAK2O60674 1132 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 USO1O60763 962 aaKnown RBP16.15■□□□□ 0.18
SDC1-204ENST00000429035 MYBP10242 640 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 NCLP19338 710 aaKnown RBP16.15■□□□□ 0.18
SDC1-204ENST00000429035 ATP2B1P20020 1258 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 HOXA11P31270 313 aaPredicted RBP16.15■□□□□ 0.18
SDC1-204ENST00000429035 TXKP42681 527 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 ME3Q16798 604 aa16.15■□□□□ 0.18
SDC1-204ENST00000429035 NOTUMQ6P988 496 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms