RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 PEX3P56589 373 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 SDCCAG8Q86SQ7 713 aaPredicted RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 TRIM59Q8IWR1 403 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 C9orf72Q96LT7 481 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 DDX20Q9UHI6 824 aaKnown RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 PPP1R9AQ9ULJ8 1098 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 ALG6Q9Y672 507 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 EMSYQ7Z589 1322 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 PASKQ96RG2 1323 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 CYP26A1O43174 497 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 SPAG7O75391 227 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 ECEL1O95672 775 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 BMP3P12645 472 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 MXI1P50539 228 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 FXR2P51116 673 aaKnown RBP eCLIP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 DYNLT1P63172 113 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 IFI35P80217 286 aaPredicted RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF844Q08AG5 666 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 OLFML2BQ68BL8 750 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 CYB5D1Q6P9G0 228 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 TTYH3Q9C0H2 523 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 SEMA4AQ9H3S1 761 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 TYW1Q9NV66 732 aaKnown RBP12.79□□□□□ -0.36
HMGB1-206ENST00000405805 FGFR1OP2Q9NVK5 253 aa12.79□□□□□ -0.36
HMGB1-206ENST00000405805 MAPK4P31152 587 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 LRRC34Q8IZ02 419 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 SPIRE2Q8WWL2 714 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 XPO6Q96QU8 1125 aaKnown RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 INTS2Q9H0H0 1204 aaKnown RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 FOXN3O00409 490 aaPredicted RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 CLDN3O15551 220 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 RAD17O75943 681 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 SUN1O94901 812 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 POLR2MP0CAP2 368 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 PRLRP16471 622 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 HSPA1LP34931 641 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 SOX5P35711 763 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 ZNF394Q53GI3 561 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 RFFLQ8WZ73 363 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 POMGNT1Q8WZA1 660 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 RTFDC1Q9BY42 306 aaPredicted RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 TMBIM4Q9HC24 238 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 PHRF1Q9P1Y6 1649 aaKnown RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 ATF2P15336 505 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 QPCTQ16769 361 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 KIAA1755Q5JYT7 1200 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 SYCP2LQ5T4T6 812 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 JAMLQ86YT9 394 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 ATG4AQ8WYN0 398 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 GLT8D2Q9H1C3 349 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 ALG13Q9NP73 1137 aaKnown RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 ANAPC7Q9UJX3 599 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 L3MBTL1Q9Y468 752 aa12.78□□□□□ -0.36
HMGB1-206ENST00000405805 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.78□□□□□ -0.36
HMGB1-206ENST00000405805 CALCAP01258 141 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 KYNUQ16719 465 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 DCUN1D2Q6PH85 259 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 FAM210AQ96ND0 272 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 EDEM3Q9BZQ6 932 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 COA1Q9GZY4 146 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.77□□□□□ -0.36
HMGB1-206ENST00000405805 SLC16A4O15374 487 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 ATRNO75882 1429 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 UPP2O95045 317 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 SHBGP04278 402 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 BRAFP15056 766 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 CDK17Q00537 523 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 C10orf76Q5T2E6 689 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 SYDE2Q5VT97 1194 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 GRAMD4Q6IC98 578 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 LARGE2Q8N3Y3 721 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 DAGLBQ8NCG7 672 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.77□□□□□ -0.36
HMGB1-206ENST00000405805 SLC20A1Q8WUM9 679 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 RNF25Q96BH1 459 aaPredicted RBP12.77□□□□□ -0.36
HMGB1-206ENST00000405805 FAM84AQ96KN4 292 aa12.77□□□□□ -0.36
HMGB1-206ENST00000405805 FOXO6A8MYZ6 492 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 TISP43B9A030 160 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 CHRNA5P30532 468 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 PDE6CP51160 858 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 ADCY2Q08462 1091 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 HAS1Q92839 578 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 KIFAP3Q92845 792 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 CAVIN3Q969G5 261 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 SPATA17Q96L03 361 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 NEUROG2Q9H2A3 272 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 TAS2R14Q9NYV8 317 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 DLGAP2Q9P1A6 1054 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 ANAPC5Q9UJX4 755 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 AGTPBP1Q9UPW5 1226 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 NR2E1Q9Y466 385 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 GPR75-ASB3A0A0A6YYF3 556 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 CRKP46108 304 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 HGSNATQ68CP4 663 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 RFX8Q6ZV50 586 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 IQCKQ8N0W5 287 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 KLHL23Q8NBE8 558 aa12.77□□□□□ -0.37
HMGB1-206ENST00000405805 IQCGQ9H095 443 aaKnown RBP12.77□□□□□ -0.37
HMGB1-206ENST00000405805 TSPYL2Q9H2G4 693 aaPredicted RBP12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms