RNA–Protein interactions for RNA: ENST00000339950.4

USP1-201, Transcript of ubiquitin specific peptidase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP1, Length 3,996 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP1-201ENST00000339950 ZNF564Q8TBZ8 553 aaPredicted RBP12.83□□□□□ -0.36
USP1-201ENST00000339950 NT5C1BQ96P26 610 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 WDR18Q9BV38 432 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 GABBR1Q9UBS5 961 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 NWD2Q9ULI1 1742 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 CHN1P15882 459 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 TMEM270Q6UE05 265 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 HOOK3Q86VS8 718 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 XXYLT1Q8NBI6 393 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 MASTLQ96GX5 879 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 AGPAT1Q99943 283 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 ERVK-5Q9HDB9 667 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 KCNH7Q9NS40 1196 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 TCRBV7S2A1N4TA0A589 114 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 ESYT2A0FGR8 921 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 IL1R1P14778 569 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 PMS2P54278 862 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 PPP2R2AP63151 447 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 PPP2R5DQ14738 602 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 VPS72Q15906 364 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 CHADLQ6NUI6 762 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 FRMD5Q7Z6J6 570 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 VSIG1Q86XK7 387 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 CCDC13Q8IYE1 715 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 MYCBPAPQ8TBZ2 947 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 RFFLQ8WZ73 363 aa12.83□□□□□ -0.36
USP1-201ENST00000339950 H0Y3Z8 333 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 CETN2P41208 172 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 ZBTB16Q05516 673 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 DMP1Q13316 513 aaPredicted RBP12.82□□□□□ -0.36
USP1-201ENST00000339950 RFX8Q6ZV50 586 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 PODNQ7Z5L7 613 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 IQCDQ96DY2 449 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 FAM20AQ96MK3 541 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 TAAR1Q96RJ0 339 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 NAP1L3Q99457 506 aaPredicted RBP12.82□□□□□ -0.36
USP1-201ENST00000339950 APEX2Q9UBZ4 518 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 NSFP46459 744 aaKnown RBP12.82□□□□□ -0.36
USP1-201ENST00000339950 AARSP49588 968 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP1-201ENST00000339950 IRX4P78413 519 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 BFSP1Q12934 665 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 BARGINQ6ZT62 677 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 IRF2BP2Q7Z5L9 587 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 JAMLQ86YT9 394 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 THNSL1Q8IYQ7 743 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 LNX1Q8TBB1 728 aaPredicted RBP12.82□□□□□ -0.36
USP1-201ENST00000339950 PPP1R13LQ8WUF5 828 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 TATDN2Q93075 761 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 PSMD1Q99460 953 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 C1orf112Q9NSG2 853 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 NKIRAS1Q9NYS0 192 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 HSPBP1Q9NZL4 362 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 PIK3CAP42336 1068 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 TFAMQ00059 246 aaKnown RBP12.82□□□□□ -0.36
USP1-201ENST00000339950 AP3B2Q13367 1082 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 DCAF4Q8WV16 495 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 CYFIP2Q96F07 1278 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 NCAPGQ9BPX3 1015 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 KCTD10Q9H3F6 313 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 RNF19AQ9NV58 838 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 SLTMQ9NWH9 1034 aaKnown RBP eCLIP12.82□□□□□ -0.36
USP1-201ENST00000339950 CTNNAL1Q9UBT7 734 aa12.82□□□□□ -0.36
USP1-201ENST00000339950 PPP3CAQ08209 521 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 PTGISQ16647 500 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 FIGNQ5HY92 759 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 PHLDB3Q6NSJ2 640 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 ALG3Q92685 438 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 AKT1S1Q96B36 256 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 ACCSQ96QU6 501 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 DDX23Q9BUQ8 820 aaKnown RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 IMPG2Q9BZV3 1241 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 TMEM117Q9H0C3 514 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 ZWILCHQ9H900 591 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 PCSK1NQ9UHG2 260 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 DCCP43146 1447 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 SYNJ2BP-COX16A0A087WUM0 186 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 HMGB1P1B2RPK0 211 aaPredicted RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 F8VZ95 297 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 HNRNPH1P31943 449 aaKnown RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 POLGP54098 1239 aaPredicted RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 GPC5P78333 572 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 EN1Q05925 392 aaPredicted RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 MTMR3Q13615 1198 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 SCYL2Q6P3W7 929 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 SH3BP5LQ7L8J4 393 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 SAMD7Q7Z3H4 446 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 TAS1R2Q8TE23 839 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 RAPGEF5Q92565 580 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 IFT74Q96LB3 600 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 GANQ9H2C0 597 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 COX16Q9P0S2 106 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 hCG_1984214I3L0E3 225 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 POLRMTO00411 1230 aaKnown RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 KRT10P13645 584 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 HSPA1LP34931 641 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 CTAGE3PQ8IX95 158 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 ZNF713Q8N859 430 aaPredicted RBP12.81□□□□□ -0.36
USP1-201ENST00000339950 KIFAP3Q92845 792 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 PLVAPQ9BX97 442 aa12.81□□□□□ -0.36
USP1-201ENST00000339950 CXorf56Q9H5V9 222 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms