RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 COQ7Q99807 217 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 TUBGCP4Q9UGJ1 667 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 GPR141Q7Z602 305 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 FAM89AQ96GI7 184 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 ZFATQ9P243 1243 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 RRM2BQ7LG56 351 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 MB21D1Q8N884 522 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 TGFBRAP1Q8WUH2 860 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 ULK4Q96C45 1275 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 FIS1Q9Y3D6 152 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 ASXL2Q76L83 1435 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 PLCG1P19174 1290 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 EIF6P56537 245 aaKnown RBP15.11■□□□□ 0.01
COL7A1-201ENST00000328333 QKIQ96PU8 341 aaKnown RBP eCLIP15.11■□□□□ 0.01
COL7A1-201ENST00000328333 EPHB1P54762 984 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 GPS1Q13098 491 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 UNC13DQ70J99 1090 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 HNRNPLLQ8WVV9 542 aaKnown RBP15.11■□□□□ 0.01
COL7A1-201ENST00000328333 PDLIM2Q96JY6 352 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 IP6K2Q9UHH9 426 aa15.11■□□□□ 0.01
COL7A1-201ENST00000328333 SIKE1Q9BRV8 207 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 LZTS1Q9Y250 596 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 RNF139Q8WU17 664 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 LMCD1Q9NZU5 365 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 FCGR1AP12314 374 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 NUP85Q9BW27 656 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 TUBA8Q9NY65 449 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ADAM30Q9UKF2 790 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 KANSL1LA0AUZ9 987 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 MTHFD1LQ6UB35 978 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 NSUN7Q8NE18 718 aaKnown RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 IMPDH2P12268 514 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ICA1Q05084 483 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 OSBPL8Q9BZF1 889 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 APPL1Q9UKG1 709 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ADAMTS12P58397 1594 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 JAK3P52333 1124 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 PKP1Q13835 747 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 TMEM154Q6P9G4 183 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 CCDC137Q6PK04 289 aaKnown RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 CDKL3Q8IVW4 592 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 APBB2Q92870 758 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ROPN1BQ9BZX4 212 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ROPN1Q9HAT0 212 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 SAC3D1A6NKF1 404 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ENO4A6NNW6 628 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 E5RI56 91 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 NBNO60934 754 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 CCDC142Q17RM4 750 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 AARS2Q5JTZ9 985 aaKnown RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 CC2D2BQ6DHV5 1058 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 KRCC1Q9NPI7 259 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 BFARQ9NZS9 450 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 HPCAL4Q9UM19 191 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 AURKCQ9UQB9 309 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 VCAM1P19320 739 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 ZNF577Q9BSK1 485 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 EMILIN3Q9NT22 766 aa15.1■□□□□ 0.01
COL7A1-201ENST00000328333 KLHL8Q9P2G9 620 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 UBA2Q9UBT2 640 aaPredicted RBP15.1■□□□□ 0.01
COL7A1-201ENST00000328333 CCDC88CQ9P219 2028 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 PDE5AO76074 875 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 HEATR6Q6AI08 1181 aaKnown RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ENOPH1Q9UHY7 261 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 CCT8L1PA6NM43 557 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 PRPF3O43395 683 aaKnown RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 NUP62P37198 522 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 SERPINB9P50453 376 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ROR1Q01973 937 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 TAB1Q15750 504 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ZMYM1Q5SVZ6 1142 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 GIMAP8Q8ND71 665 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 RFFLQ8WZ73 363 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 KRT35Q92764 455 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 CYFIP2Q96F07 1278 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 GMEB1Q9Y692 573 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 PPP1R18Q6NYC8 613 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 KSR1Q8IVT5 923 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 SMCR8Q8TEV9 937 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 CLIC6Q96NY7 704 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ABCA8O94911 1581 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 CROCCP3Q8IVE0 287 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 MTA3Q9BTC8 594 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 SEPT9Q9UHD8 586 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 SAMD9LQ8IVG5 1584 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 TK2O00142 265 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 MAGED4Q96JG8 741 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ATG3Q9NT62 314 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ATAD3AQ9NVI7 634 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 H0YC42 278 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ZSCAN9O15535 394 aaPredicted RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 TFAMQ00059 246 aaKnown RBP15.09■□□□□ 0.01
COL7A1-201ENST00000328333 RIN3Q8TB24 985 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 FAM149B1Q96BN6 582 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 ANO3Q9BYT9 981 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 RHOT1Q8IXI2 618 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 PIK3R5Q8WYR1 880 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 PAGE5Q96GU1 130 aa15.09■□□□□ 0.01
COL7A1-201ENST00000328333 TRABDQ9H4I3 376 aa15.09■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms