RNA–Protein interactions for RNA: YOR048C

RAT1, Transcript of Nuclear 5' to 3' single-stranded RNA exonuclease, yeast

Gene RAT1, Length 3,021 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RAT1	YOR048C	CNB1	P25296	175 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	PRE2	P30656	287 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.62	RIP-Chip
RAT1	YOR048C	MAL32	P38158	584 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	VPS52	P39904	641 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	MMF1	P40185	145 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	PSA1	P41940	361 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	PMT5	P52867	743 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YIP4	P53093	235 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YGL159W	P53110	370 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YGR067C	P53243	804 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	MAL12	P53341	584 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	PDR16	P53860	351 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	IMP4	P53941	290 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	TIM44	Q01852	431 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	MRPS16	Q02608	121 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	PRM15	Q03262	622 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YDR249C	Q03787	373 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	RVB1	Q03940	463 aa	Known RBP	4.9	□□□□□ -1.62
RAT1	YOR048C	SIZ1	Q04195	904 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YDR514C	Q04408	483 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	HRT1	Q08273	121 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	YOR214C	Q12282	236 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	NPC2	Q12408	173 aa		4.9	□□□□□ -1.62
RAT1	YOR048C	IPP1	P00817	287 aa	Known RBP	4.9	□□□□□ -1.63
RAT1	YOR048C	URK1	P27515	501 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	ADE1	P27616	306 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	ATS1	P31386	333 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	ERG1	P32476	496 aa	Known RBP	4.9	□□□□□ -1.63
RAT1	YOR048C	PDR3	P33200	976 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	MSN4	P33749	630 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	PET100	P38958	111 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	PTI1	P39927	425 aa	Predicted RBP	4.9	□□□□□ -1.63
RAT1	YOR048C	UBX6	P47049	396 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	SAM37	P50110	327 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	YNR062C	P53748	327 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	PEX25	Q02969	394 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	SSY1	Q03770	852 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	KEI1	Q06346	221 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	YDL177C	Q12257	170 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	ISN1	Q99312	450 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	BEM2	P39960	2167 aa	Known RBP	4.9	□□□□□ -1.63
RAT1	YOR048C	FAB1	P34756	2278 aa		4.9	□□□□□ -1.63
RAT1	YOR048C	HAP4	P14064	554 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	RPL3	P14126	387 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	SEC22	P22214	214 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	PCL1	P24867	279 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	PUT3	P25502	979 aa	Predicted RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	YCR061W	P25639	631 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	CNE1	P27825	502 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	DCW1	P36091	449 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	YHR097C	P38809	366 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	LYS20	P48570	428 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	TPC1	P53257	314 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	MNT4	P53745	580 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	TY1A-DR2	Q03964	440 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	CWH43	P25618	953 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	AHC2	P25649	128 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	SFC1	P33303	322 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	APL3	P38065	1025 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	MAD2	P40958	196 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	BIO5	P53744	561 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	YPL014W	Q02606	381 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	YPL034W	Q03083	165 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	TY1A-MR1	Q04215	440 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	UTP15	Q04305	513 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	RSF1	Q05043	376 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	TY1A-BL	Q12266	440 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	CSF1	Q12150	2958 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	SPT15	P13393	240 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	VMA8	P32610	256 aa	Known RBP	4.89	□□□□□ -1.63
RAT1	YOR048C	SNM1	P40993	198 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	NSE4	P43124	402 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	MTL1	P53214	551 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	NRG1	Q03125	231 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	TDA1	Q03533	586 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	TPO4	Q12256	659 aa		4.89	□□□□□ -1.63
RAT1	YOR048C	BRR2	P32639	2163 aa	Known RBP	4.88	□□□□□ -1.63
RAT1	YOR048C	ARG80	P07249	177 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	SED4	P25365	1065 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	SUR1	P33300	382 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	OM14	P38325	134 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	YJL068C	P40363	299 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	ZIM17	P42844	174 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	BRR6	P53062	197 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	PAU12	P53343	120 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	NUP116	Q02630	1113 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	SNO1	Q03144	224 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	SNX41	Q04053	625 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	RDR1	Q08904	546 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	RTK1	Q12100	620 aa	Predicted RBP	4.88	□□□□□ -1.63
RAT1	YOR048C	ODC2	Q99297	307 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	AI4	P03878	556 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	YOL163W	P0CF20	169 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	APN1	P22936	367 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	MDH3	P32419	343 aa	Known RBP RIP-Chip data	4.88	□□□□□ -1.63	not detected
RAT1	YOR048C	EHT1	P38295	451 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	PHO90	P39535	881 aa		4.88	□□□□□ -1.63
RAT1	YOR048C	UTP25	P40498	721 aa	Known RBP	4.88	□□□□□ -1.63
RAT1	YOR048C	SFH5	P47008	294 aa		4.88	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 9.1 ms