RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W EHD3P28817 500 aa5.5□□□□□ -1.53
CAF40YNL288W PTP2P29461 750 aa5.5□□□□□ -1.53
CAF40YNL288W PRP19P32523 503 aaKnown RBP5.5□□□□□ -1.53
CAF40YNL288W SLC1P33333 303 aa5.5□□□□□ -1.53
CAF40YNL288W JEN1P36035 616 aa5.5□□□□□ -1.53
CAF40YNL288W SRO77P38163 1010 aa5.5□□□□□ -1.53
CAF40YNL288W CTF8P38877 133 aa5.5□□□□□ -1.53
CAF40YNL288W YER010CP40011 234 aa5.5□□□□□ -1.53
CAF40YNL288W COG3P40094 801 aa5.5□□□□□ -1.53
CAF40YNL288W PHB1P40961 287 aa5.5□□□□□ -1.53
CAF40YNL288W MDE1P47095 244 aa5.5□□□□□ -1.53
CAF40YNL288W BPL1P48445 690 aaPredicted RBP5.5□□□□□ -1.53
CAF40YNL288W YGL235WP53071 178 aa5.5□□□□□ -1.53
CAF40YNL288W COG5P53951 403 aa5.5□□□□□ -1.53
CAF40YNL288W ABZ2Q03266 374 aa5.5□□□□□ -1.53
CAF40YNL288W UTP21Q06078 939 aaPredicted RBP5.5□□□□□ -1.53
CAF40YNL288W YLR126CQ12288 251 aa5.5□□□□□ -1.53
CAF40YNL288W SFG1Q12507 346 aa5.5□□□□□ -1.53
CAF40YNL288W YGR161W-CQ3E744 92 aa5.5□□□□□ -1.53
CAF40YNL288W YBR056W-AI2HB52 66 aa5.49□□□□□ -1.53
CAF40YNL288W RHO1P06780 209 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W YOL162WP0CF19 215 aa5.49□□□□□ -1.53
CAF40YNL288W DPM1P14020 267 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W TFS1P14306 219 aa5.49□□□□□ -1.53
CAF40YNL288W AIM17P23180 465 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W RHB1P25378 209 aa5.49□□□□□ -1.53
CAF40YNL288W TIM12P32830 109 aa5.49□□□□□ -1.53
CAF40YNL288W TRS65P32893 560 aa5.49□□□□□ -1.53
CAF40YNL288W ARC19P33204 171 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W MDL1P33310 695 aa5.49□□□□□ -1.53
CAF40YNL288W GPX1P36014 167 aa5.49□□□□□ -1.53
CAF40YNL288W LHS1P36016 881 aa5.49□□□□□ -1.53
CAF40YNL288W TDA11P38854 504 aa5.49□□□□□ -1.53
CAF40YNL288W YHR180WP38868 163 aa5.49□□□□□ -1.53
CAF40YNL288W YEL057CP39983 233 aa5.49□□□□□ -1.53
CAF40YNL288W ISC1P40015 477 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W YFR054CP43622 192 aa5.49□□□□□ -1.53
CAF40YNL288W MNN5P46982 586 aa5.49□□□□□ -1.53
CAF40YNL288W UBX6P47049 396 aa5.49□□□□□ -1.53
CAF40YNL288W EXG2P52911 562 aa5.49□□□□□ -1.53
CAF40YNL288W RAI1P53063 387 aaKnown RBP5.49□□□□□ -1.53
CAF40YNL288W SNT309Q06091 175 aaPredicted RBP5.49□□□□□ -1.53
CAF40YNL288W YPR127WQ06494 345 aa5.49□□□□□ -1.53
CAF40YNL288W YDL218WQ07629 317 aa5.49□□□□□ -1.53
CAF40YNL288W YPL191CQ08930 360 aa5.49□□□□□ -1.53
CAF40YNL288W YLR125WQ12138 136 aa5.49□□□□□ -1.53
CAF40YNL288W RLM1Q12224 676 aa5.49□□□□□ -1.53
CAF40YNL288W MHF1Q3E835 90 aa5.49□□□□□ -1.53
CAF40YNL288W TPK3P05986 398 aa5.48□□□□□ -1.53
CAF40YNL288W PHO2P07269 559 aa5.48□□□□□ -1.53
CAF40YNL288W RPC40P07703 335 aaKnown RBP5.48□□□□□ -1.53
CAF40YNL288W CAR2P07991 424 aaKnown RBP5.48□□□□□ -1.53
CAF40YNL288W PDX1P16451 410 aa5.48□□□□□ -1.53
CAF40YNL288W SNF6P18888 332 aa5.48□□□□□ -1.53
CAF40YNL288W NUP1P20676 1076 aa5.48□□□□□ -1.53
CAF40YNL288W PRP28P23394 588 aa5.48□□□□□ -1.53
CAF40YNL288W SCO1P23833 295 aa5.48□□□□□ -1.53
CAF40YNL288W YCR100CP25606 316 aa5.48□□□□□ -1.53
CAF40YNL288W HSP30P25619 332 aa5.48□□□□□ -1.53
CAF40YNL288W ATS1P31386 333 aa5.48□□□□□ -1.53
CAF40YNL288W THI4P32318 326 aa5.48□□□□□ -1.53
CAF40YNL288W SSE2P32590 693 aaKnown RBP5.48□□□□□ -1.53
CAF40YNL288W AFR1P33304 620 aa5.48□□□□□ -1.53
CAF40YNL288W NIC96P34077 839 aa5.48□□□□□ -1.53
CAF40YNL288W YKL071WP36086 256 aa5.48□□□□□ -1.53
CAF40YNL288W ECM8P38246 354 aa5.48□□□□□ -1.53
CAF40YNL288W APE4P38821 490 aa5.48□□□□□ -1.53
CAF40YNL288W YRB2P40517 327 aa5.48□□□□□ -1.53
CAF40YNL288W REE1P40893 198 aa5.48□□□□□ -1.53
CAF40YNL288W SHE4P51534 789 aa5.48□□□□□ -1.53
CAF40YNL288W YGL101WP53144 215 aa5.48□□□□□ -1.53
CAF40YNL288W RPN14P53196 417 aa5.48□□□□□ -1.53
CAF40YNL288W RBG2P53295 368 aaKnown RBP5.48□□□□□ -1.53
CAF40YNL288W FDC1Q03034 503 aa5.48□□□□□ -1.53
CAF40YNL288W YPL039WQ03080 316 aa5.48□□□□□ -1.53
CAF40YNL288W SDC1Q03323 175 aa5.48□□□□□ -1.53
CAF40YNL288W DML1Q03652 475 aa5.48□□□□□ -1.53
CAF40YNL288W GIS1Q03833 894 aa5.48□□□□□ -1.53
CAF40YNL288W SMP3Q04174 516 aa5.48□□□□□ -1.53
CAF40YNL288W COX20Q04935 205 aa5.48□□□□□ -1.53
CAF40YNL288W IRC19Q07843 230 aa5.48□□□□□ -1.53
CAF40YNL288W COQ10Q08058 207 aa5.48□□□□□ -1.53
CAF40YNL288W UIP4Q08926 304 aa5.48□□□□□ -1.53
CAF40YNL288W YRA1Q12159 226 aaKnown RBP5.48□□□□□ -1.53
CAF40YNL288W SWM1Q12379 170 aa5.48□□□□□ -1.53
CAF40YNL288W GCN1P33892 2672 aaKnown RBP5.47□□□□□ -1.53
CAF40YNL288W PEP4P07267 405 aaKnown RBP5.47□□□□□ -1.53
CAF40YNL288W YPK2P18961 677 aa5.47□□□□□ -1.53
CAF40YNL288W CYS4P32582 507 aaKnown RBP5.47□□□□□ -1.53
CAF40YNL288W MSN4P33749 630 aa5.47□□□□□ -1.53
CAF40YNL288W APD1P38281 316 aa5.47□□□□□ -1.53
CAF40YNL288W MED8P38304 223 aa5.47□□□□□ -1.53
CAF40YNL288W NAB3P38996 802 aaKnown RBP RIP-Chip data5.47□□□□□ -1.53not detected
CAF40YNL288W RRG9P40156 214 aa5.47□□□□□ -1.53
CAF40YNL288W YNL208WP40159 199 aaKnown RBP5.47□□□□□ -1.53
CAF40YNL288W URM1P40554 99 aaPredicted RBP5.47□□□□□ -1.53
CAF40YNL288W PHO23P50947 330 aa5.47□□□□□ -1.53
CAF40YNL288W MPP6P53725 186 aaPredicted RBP5.47□□□□□ -1.53
CAF40YNL288W YNR062CP53748 327 aa5.47□□□□□ -1.53
CAF40YNL288W BSC5P53755 489 aa5.47□□□□□ -1.53
Retrieved 100 of 5,963 RNA–protein pairs in 37 ms