RNA–Protein interactions for RNA: YLL039C

UBI4, Transcript of Ubiquitin, yeast

Gene UBI4, Length 1,146 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UBI4	YLL039C	BET3	P36149	193 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	RRF1	P38771	230 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	TRR2	P38816	342 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	SWD1	P39706	426 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	LAS21	P40367	830 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	BAP3	P41815	604 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	CUP9	P41817	306 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	IKS1	P47042	667 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	SSN8	P47821	323 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	RPS12	P48589	143 aa	Known RBP	4.15	□□□□□ -1.75
UBI4	YLL039C	MAL11	P53048	616 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	COG5	P53951	403 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	HXT11	P54862	567 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YPL107W	Q02873	248 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YMR210W	Q03649	449 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	AIM36	Q03798	255 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YDR514C	Q04408	483 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	SMA2	Q04658	369 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YPS7	Q06325	596 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	ARO10	Q06408	635 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	ASR1	Q06834	288 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YOR365C	Q08844	703 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	REX3	Q12090	404 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	BSC1	Q12140	328 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	YOL159C-A	Q3E769	90 aa		4.15	□□□□□ -1.75
UBI4	YLL039C	GCN4	P03069	281 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	MET17	P06106	444 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	PUT2	P07275	575 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	ZWF1	P11412	505 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	MER1	P16523	270 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	SAR1	P20606	190 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	RPS1B	P23248	255 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	SPT14	P32363	452 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	MKK1	P32490	508 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	LHP1	P33399	275 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	ECM31	P38122	312 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	MBA1	P38300	278 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	PZF1	P39933	429 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	TPA1	P40032	644 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	SOK1	P40317	901 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	ARF3	P40994	183 aa	RIP-Chip data	4.14	□□□□□ -1.75	not detected
UBI4	YLL039C	MNN5	P46982	586 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	OCA1	P50946	238 aa	Predicted RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	YGR079W	P53249	370 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	GPI1	P53306	609 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	IGO1	P53897	168 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	MRPS16	Q02608	121 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	ATG38	Q05789	226 aa	Known RBP	4.14	□□□□□ -1.75
UBI4	YLL039C	SPO77	Q06134	477 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	SWA2	Q06677	668 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	YOL024W	Q08172	172 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	THP1	Q08231	455 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	AKR2	Q12013	749 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	TPO4	Q12256	659 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	FMP16	Q12497	93 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	RIB3	Q99258	208 aa		4.14	□□□□□ -1.75
UBI4	YLL039C	URA3	P03962	267 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	RPP2A	P05319	106 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	RHO1	P06780	209 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	RPL20A	P0CX23	172 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	RPL20B	P0CX24	172 aa	Predicted RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	CBS1	P14066	229 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	SEC62	P21825	274 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	MCK1	P21965	375 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	URE2	P23202	354 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	GPI12	P23797	304 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	CTR86	P25355	563 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	NTG1	P31378	399 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	HYM1	P32464	399 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	MSS1	P32559	526 aa	Predicted RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	TUL1	P36096	758 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	SKG1	P36169	355 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	TSL1	P38427	1098 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	IMD2	P38697	523 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	IPT1	P38954	527 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	YEL020C	P39994	560 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	PHM8	P40025	321 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	GID8	P40208	455 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	GTT1	P40582	234 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	YGR210C	P42942	411 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	SNO3	P43544	222 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	AAD10	P47182	288 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	BUL1	P48524	976 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	GPI8	P49018	411 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	RAI1	P53063	387 aa	Known RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	TPN1	P53099	579 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	NQM1	P53228	333 aa	Predicted RBP	4.13	□□□□□ -1.75
UBI4	YLL039C	TPC1	P53257	314 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	SUR7	P54003	302 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	MRPL13	Q02204	264 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	NUP116	Q02630	1113 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	YDR249C	Q03787	373 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	BNA7	Q04066	261 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	YLR283W	Q05867	314 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	BUR2	Q05949	395 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	GPI11	Q06636	219 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	REH1	Q06709	432 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	RRT8	Q08219	342 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	ENB1	Q08299	606 aa		4.13	□□□□□ -1.75
UBI4	YLL039C	THP3	Q12049	470 aa	Known RBP	4.13	□□□□□ -1.75

Retrieved 100 of 5,963 RNA–protein pairs in 68.2 ms