RNA–Protein interactions for RNA: ENST00000636228.1

CLN3-246, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,224 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-246ENST00000636228 TMEM169Q96HH4 297 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 CEP170P1Q96L14 293 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 PHOX2BQ99453 314 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 INO80BQ9C086 356 aaPredicted RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 IFT122Q9HBG6 1241 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 KCNMB3Q9NPA1 279 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 TBC1D13Q9NVG8 400 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 RGL1Q9NZL6 768 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 DNAJB4Q9UDY4 337 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 MUC6Q6W4X9 2439 aa18.1■□□□□ 0.49
CLN3-246ENST00000636228 MYH9P35579 1960 aaKnown RBP18.1■□□□□ 0.49
CLN3-246ENST00000636228 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP18.09■□□□□ 0.49
CLN3-246ENST00000636228 FAM205CA6NFA0 338 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 ZBTB39O15060 712 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 EPB41L2O43491 1005 aaKnown RBP18.09■□□□□ 0.49
CLN3-246ENST00000636228 B4GALT3O60512 393 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 GALTP07902 379 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 SRGAP2CP0DJJ0 459 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 HOXB8P17481 243 aaPredicted RBP18.09■□□□□ 0.49
CLN3-246ENST00000636228 RNASELQ05823 741 aaKnown RBP18.09■□□□□ 0.49
CLN3-246ENST00000636228 PPP2R5CQ13362 524 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 NOMO2Q5JPE7 1267 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 NEK8Q86SG6 692 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 ZNF280BQ86YH2 543 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 PRPF31Q8WWY3 499 aaKnown RBP18.09■□□□□ 0.49
CLN3-246ENST00000636228 HAS1Q92839 578 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 TRAIPQ9BWF2 469 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 ZBP1Q9H171 429 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 KCNH6Q9H252 994 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 POMKQ9H5K3 350 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 MINDY3Q9H8M7 445 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 TPCN1Q9ULQ1 816 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 COL4A3BPQ9Y5P4 624 aa18.09■□□□□ 0.49
CLN3-246ENST00000636228 MARCH6O60337 910 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 EPCAMP16422 314 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 SLC11A1P49279 550 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 POLGP54098 1239 aaPredicted RBP18.08■□□□□ 0.48
CLN3-246ENST00000636228 SIGLEC14Q08ET2 396 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 CTTNQ14247 550 aaKnown RBP18.08■□□□□ 0.48
CLN3-246ENST00000636228 PTPN21Q16825 1174 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 TPRNQ4KMQ1 711 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 RARS2Q5T160 578 aaKnown RBP18.08■□□□□ 0.48
CLN3-246ENST00000636228 NCAPH2Q6IBW4 605 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 GLB1LQ6UWU2 654 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 ZBTB33Q86T24 672 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 POTEDQ86YR6 584 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 SUGP1Q8IWZ8 645 aaKnown RBP18.08■□□□□ 0.48
CLN3-246ENST00000636228 SLC7A3Q8WY07 619 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 ASIC4Q96FT7 647 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 IGSF21Q96ID5 467 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 DYDC2Q96IM9 177 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 FAM20AQ96MK3 541 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 ADAM7Q9H2U9 754 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 PCDHB2Q9Y5E7 798 aa18.08■□□□□ 0.48
CLN3-246ENST00000636228 TRIOO75962 3097 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 TECTAO75443 2155 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 CDKL5O76039 1030 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 DDHD2O94830 711 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 CTDNEP1O95476 244 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 P4HBP07237 508 aaKnown RBP18.07■□□□□ 0.48
CLN3-246ENST00000636228 SKIP12755 728 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 CYP4A11Q02928 519 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 LAMTOR4Q0VGL1 99 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 PPP4R3AQ6IN85 833 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 CES5AQ6NT32 575 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 AGMOQ6ZNB7 445 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 FBXL6Q8N531 539 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 TMEM87AQ8NBN3 555 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 JPH2Q9BR39 696 aaPredicted RBP18.07■□□□□ 0.48
CLN3-246ENST00000636228 LXNQ9BS40 222 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 VN1R3Q9BXE9 311 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 DHX33Q9H6R0 707 aaKnown RBP18.07■□□□□ 0.48
CLN3-246ENST00000636228 AGPAT5Q9NUQ2 364 aa18.07■□□□□ 0.48
CLN3-246ENST00000636228 C2CD4DB7Z1M9 353 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 PFKFB2O60825 505 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 ZNF623O75123 536 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 PDGFBP01127 241 aaPredicted RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 SSBP05455 408 aaKnown RBP eCLIP18.06■□□□□ 0.48
CLN3-246ENST00000636228 HOXA11P31270 313 aaPredicted RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 VCPP55072 806 aaKnown RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 NR5A1Q13285 461 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 BMS1Q14692 1282 aaKnown RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 EPHA7Q15375 998 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 UBXN11Q5T124 520 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 DDX53Q86TM3 631 aaKnown RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 FAM177A1Q8N128 213 aaPredicted RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 NECAB1Q8N987 351 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 KREMEN2Q8NCW0 462 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 PSPC1Q8WXF1 523 aaKnown RBP18.06■□□□□ 0.48
CLN3-246ENST00000636228 SMOC2Q9H3U7 446 aa18.06■□□□□ 0.48
CLN3-246ENST00000636228 WDFY4Q6ZS81 3184 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 DKC1O60832 514 aaKnown RBP eCLIP18.05■□□□□ 0.48
CLN3-246ENST00000636228 POMCP01189 267 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 CTSAP10619 480 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 GCFC2P16383 781 aaKnown RBP18.05■□□□□ 0.48
CLN3-246ENST00000636228 XBP1P17861 261 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 YWHABP31946 246 aaKnown RBP18.05■□□□□ 0.48
CLN3-246ENST00000636228 RAB27AP51159 221 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 ITIH3Q06033 890 aa18.05■□□□□ 0.48
CLN3-246ENST00000636228 XKR9Q5GH70 373 aa18.05■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms