RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 MTCH2Q9Y6C9 303 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 MYH15Q9Y2K3 1946 aa14.87□□□□□ -0.03
CLK3-216ENST00000564468 VWA3AA6NCI4 1184 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 C5orf67F2Z3F1 127 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 H3BNC9 293 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 SLC26A4O43511 780 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 CYP11B2P19099 503 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 RAB27AP51159 221 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 PTENP60484 403 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 GPM6BQ13491 265 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 PADI6Q6TGC4 694 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 SPRED2Q7Z698 418 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 C11orf84Q9BUA3 381 aaPredicted RBP14.86□□□□□ -0.03
CLK3-216ENST00000564468 NFKBIZQ9BYH8 718 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 TMEM117Q9H0C3 514 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 POLR3FQ9H1D9 316 aaPredicted RBP14.86□□□□□ -0.03
CLK3-216ENST00000564468 FOXD4L1Q9NU39 408 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 AGPAT5Q9NUQ2 364 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 COG5Q9UP83 839 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 MYO7AQ13402 2215 aa14.86□□□□□ -0.03
CLK3-216ENST00000564468 A0A087WWV3 80 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 TBKBP1A7MCY6 615 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 STX6O43752 255 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 LPXNO60711 386 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 EYA4O95677 639 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 CAPSQ13938 189 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 PPP2R5AQ15172 486 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 IL17AQ16552 155 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 CSPP1Q1MSJ5 1256 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 PAN2Q504Q3 1202 aaKnown RBP14.85□□□□□ -0.03
CLK3-216ENST00000564468 SPOUT1Q5T280 376 aaKnown RBP14.85□□□□□ -0.03
CLK3-216ENST00000564468 FAM102BQ5T8I3 360 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 ZBTB8OSQ8IWT0 167 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 P2RX5Q93086 422 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 PGBD4Q96DM1 585 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 CDK5RAP3Q96JB5 506 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 LMAN2LQ9H0V9 348 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 BHMT2Q9H2M3 363 aa14.85□□□□□ -0.03
CLK3-216ENST00000564468 DAXXQ9UER7 740 aaPredicted RBP14.85□□□□□ -0.03
CLK3-216ENST00000564468 CARNS1A5YM72 827 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 INO80B-WBP1J3KQ70 363 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 ZNF623O75123 536 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 GLRA2P23416 452 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 HOXD11P31277 338 aaPredicted RBP14.84□□□□□ -0.03
CLK3-216ENST00000564468 TFF2Q03403 129 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 SF3A1Q15459 793 aaKnown RBP14.84□□□□□ -0.03
CLK3-216ENST00000564468 ECM1Q16610 540 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 HYIQ5T013 277 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 MAEAQ7L5Y9 396 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 RNF169Q8NCN4 708 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 CNNM3Q8NE01 707 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 ASAP3Q8TDY4 903 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 KIFAP3Q92845 792 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 MRPL38Q96DV4 380 aaKnown RBP14.84□□□□□ -0.03
CLK3-216ENST00000564468 CCDC51Q96ER9 411 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 IFT74Q96LB3 600 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 NECAB3Q96P71 396 aaPredicted RBP14.84□□□□□ -0.03
CLK3-216ENST00000564468 C2orf40Q9H1Z8 148 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 FAM105AQ9NUU6 356 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 PCDHB12Q9Y5F1 795 aa14.84□□□□□ -0.03
CLK3-216ENST00000564468 MRPL42Q9Y6G3 142 aaKnown RBP14.84□□□□□ -0.03
CLK3-216ENST00000564468 LRRIQ4A6NIV6 560 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 PP2D1A8MPX8 630 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 FGFR1P11362 822 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 CDC25AP30304 524 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 LONP1P36776 959 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 UBA7P41226 1012 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 NAMPTP43490 491 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 RESTQ13127 1097 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 ZRSR1Q15695 479 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 NOTUMQ6P988 496 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 ZNF598Q86UK7 904 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 CALML4Q96GE6 196 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 MMTAG2Q9BU76 263 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 TIPINQ9BVW5 301 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 MRPL9Q9BYD2 267 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 MINDY3Q9H8M7 445 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 PRMT7Q9NVM4 692 aaPredicted RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 KCNG1Q9UIX4 513 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 MTMR6Q9Y217 621 aa14.83□□□□□ -0.04
CLK3-216ENST00000564468 TDRD15B5MCY1 1934 aaKnown RBP14.83□□□□□ -0.04
CLK3-216ENST00000564468 PLXNA4Q9HCM2 1894 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 BRWD1Q9NSI6 2320 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 PIEZO1Q92508 2521 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 E9PMD0 336 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 LINC00271P0C7V0 271 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 LAG3P18627 525 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 GATMP50440 423 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 MBTD1Q05BQ5 628 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 TIGD5Q53EQ6 642 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 TMEM31Q5JXX7 168 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 CABP7Q86V35 215 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 LRRC43Q8N309 656 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 DEPTORQ8TB45 409 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 PRIMPOLQ96LW4 560 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 CASD1Q96PB1 797 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 UBN1Q9NPG3 1134 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 GPRC5CQ9NQ84 441 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 ATG2AQ2TAZ0 1938 aa14.82□□□□□ -0.04
CLK3-216ENST00000564468 HOXA11P31270 313 aaPredicted RBP14.81□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms