RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PPP1R11O60927 126 aaPredicted RBP14.36□□□□□ -0.11
CLK3-206ENST00000562078 RAD23BP54727 409 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 OR52E8Q6IFG1 317 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 UCMAQ8WVF2 138 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 TLCD1Q96CP7 247 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 CCSER1Q9C0I3 900 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 RAB17Q9H0T7 212 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 THAP9Q9H5L6 903 aa14.36□□□□□ -0.11
CLK3-206ENST00000562078 HGSO14964 777 aaPredicted RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 NKRFO15226 690 aaKnown RBP eCLIP14.35□□□□□ -0.11
CLK3-206ENST00000562078 MAGEA1P43355 309 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 IFNAR2P48551 515 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 KLC1Q07866 573 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 BNIP1Q12981 228 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 PLS1Q14651 629 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 DNAJC14Q6Y2X3 702 aaPredicted RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 TRIM42Q8IWZ5 723 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 CCDC155Q8N6L0 562 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 RETREG2Q8NC44 543 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 LRRC15Q8TF66 581 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 CCDC17Q96LX7 622 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 ANKRD27Q96NW4 1050 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 NOX5Q96PH1 765 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 TUBGCP2Q9BSJ2 902 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 PREBQ9HCU5 417 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 RNF14Q9UBS8 474 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 PHF24Q9UPV7 400 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 SMCHD1A6NHR9 2005 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 PNMA6FA0A0J9YX94 578 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 USP17L10C9JJH3 530 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 ENTPD3O75355 529 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 EEF1GP26641 437 aaKnown RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 ZNF131P52739 623 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 CDK17Q00537 523 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 RNASELQ05823 741 aaKnown RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 DYNC1I2Q13409 638 aaKnown RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 DBN1Q16643 649 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 UBE2SQ16763 222 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 CERKLQ49MI3 558 aaPredicted RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 GPATCH4Q5T3I0 446 aaKnown RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 CABP7Q86V35 215 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 IFT43Q96FT9 208 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 INPP4AQ96PE3 977 aaPredicted RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 SYT17Q9BSW7 474 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 ZWILCHQ9H900 591 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 PI4KBQ9UBF8 816 aa14.35□□□□□ -0.11
CLK3-206ENST00000562078 ZNF70Q9UC06 446 aaPredicted RBP14.35□□□□□ -0.11
CLK3-206ENST00000562078 NPM3O75607 178 aaKnown RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 PALMO75781 387 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 PLCG1P19174 1290 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 GFPT1Q06210 699 aaPredicted RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 ASRGL1Q7L266 308 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 APLFQ8IW19 511 aaPredicted RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 PBKQ96KB5 322 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 TRIM47Q96LD4 638 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 ADAM7Q9H2U9 754 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 MYOZ2Q9NPC6 264 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 RMND1Q9NWS8 449 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 MAGEC2Q9UBF1 373 aaPredicted RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 SBF1O95248 1867 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 F8VZ95 297 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 FZD9O00144 591 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 EPHB6O15197 1021 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 EEF2P13639 858 aaKnown RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 RPS12P25398 132 aaKnown RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 TECP42680 631 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 SLC1A4P43007 532 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 TNNI2P48788 182 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 CUL1Q13616 776 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 PABPC1LQ4VXU2 614 aaKnown RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 RBM26Q5T8P6 1007 aaKnown RBP14.34□□□□□ -0.11
CLK3-206ENST00000562078 FBF1Q8TES7 1133 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 DTNBP1Q96EV8 351 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 AK8Q96MA6 479 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 NDNQ99608 321 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 YIPF2Q9BWQ6 316 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 SDAD1Q9NVU7 687 aaKnown RBP eCLIP14.34□□□□□ -0.11
CLK3-206ENST00000562078 GALNT8Q9NY28 637 aa14.34□□□□□ -0.11
CLK3-206ENST00000562078 PDLIM1O00151 329 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 SLC37A4O43826 429 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 SNX3O60493 162 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 GDF11O95390 407 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 TDP2O95551 362 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 OATP04181 439 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 GMPSP49915 693 aaPredicted RBP14.33□□□□□ -0.12
CLK3-206ENST00000562078 TNNC1P63316 161 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 EHHADHQ08426 723 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 TMC3Q7Z5M5 1100 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 USP38Q8NB14 1042 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 PLAGL2Q9UPG8 496 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 LMNB1P20700 586 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 PEX5P50542 639 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 DHX9Q08211 1270 aaKnown RBP14.33□□□□□ -0.12
CLK3-206ENST00000562078 SPDYE2Q495Y8 402 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 PPP1R18Q6NYC8 613 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 ADSSL1Q8N142 457 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 MTMR14Q8NCE2 650 aa14.33□□□□□ -0.12
CLK3-206ENST00000562078 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP14.33□□□□□ -0.12
CLK3-206ENST00000562078 UTP4Q969X6 686 aaKnown RBP14.33□□□□□ -0.12
CLK3-206ENST00000562078 CSRNP1Q96S65 589 aa14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms