RNA–Protein interactions for RNA: ENST00000561326.5

USP3-219, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-219ENST00000561326 TRIM17Q9Y577 477 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 SIP14410 1827 aa11.3□□□□□ -0.6
USP3-219ENST00000561326 SCN10AQ9Y5Y9 1956 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 HAS3O00219 553 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 CLIC2O15247 247 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SLC16A3O15427 465 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 TGFB1I1O43294 461 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 C22orf31O95567 290 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SRGAP2CP0DJJ0 459 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SMIM10L2AP0DMW4 78 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SMIM10L2BP0DMW5 78 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 CCND3P30281 292 aaPredicted RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 GRK4P32298 578 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 PSMC2P35998 433 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 MARSP56192 900 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 PURAQ00577 322 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 CAP1Q01518 475 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 KCNA1Q09470 495 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 TRIM32Q13049 653 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 MAN2A1Q16706 1144 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 FKBP15Q5T1M5 1219 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 MAP3K21Q5TCX8 1036 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 CEP135Q66GS9 1140 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SLFN12LQ6IEE8 588 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 LRRC55Q6ZSA7 311 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 RNF180Q86T96 592 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 RHPN2Q8IUC4 686 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 KSR1Q8IVT5 923 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 C12orf56Q8IXR9 622 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 LRRC71Q8N4P6 559 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 C7orf31Q8N865 590 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SPC24Q8NBT2 197 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 ASAP3Q8TDY4 903 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 TMEM174Q8WUU8 243 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 TRAPPC12Q8WVT3 735 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 LENG1Q96BZ8 264 aaPredicted RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 EEF2KMTQ96G04 330 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 MKNK1Q9BUB5 465 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 NOC4LQ9BVI4 516 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 AGPAT3Q9NRZ7 376 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 SETD4Q9NVD3 440 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 WBP1LQ9NX94 342 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 TAB2Q9NYJ8 693 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 ARMCX3Q9UH62 379 aaPredicted RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 DDX20Q9UHI6 824 aaKnown RBP11.29□□□□□ -0.6
USP3-219ENST00000561326 AKT3Q9Y243 479 aa11.29□□□□□ -0.6
USP3-219ENST00000561326 HNRNPDLO14979 420 aaKnown RBP11.28□□□□□ -0.6
USP3-219ENST00000561326 KIAA0391O15091 583 aaKnown RBP11.28□□□□□ -0.6
USP3-219ENST00000561326 EXOC3O60645 756 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 TPM1P09493 284 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 PHKA2P46019 1235 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 LIG4P49917 911 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 GSDMDP57764 484 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 UBXN1Q04323 297 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 CAPSQ13938 189 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 MAPK6Q16659 721 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 VWA3BQ502W6 1294 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 HS1BP3Q53T59 392 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 ARMCX5Q6P1M9 558 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 NFRKBQ6P4R8 1299 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 MAP4K3Q8IVH8 894 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 RNF149Q8NC42 400 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 KAT2BQ92831 832 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 DMAC2Q9NW81 257 aa11.28□□□□□ -0.6
USP3-219ENST00000561326 UTP18Q9Y5J1 556 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP3-219ENST00000561326 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP11.28□□□□□ -0.6
USP3-219ENST00000561326 SMIM35A0A1B0GVV1 85 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 C17orf102A2RUQ5 167 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 LGALS16A8MUM7 142 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 MAPK13O15264 365 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 NRDCO43847 1150 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 CABYRO75952 493 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 PGK1P00558 417 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 MYCNP04198 464 aaPredicted RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 INHAP05111 366 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 RPLP2P05387 115 aaKnown RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 KRT13P13646 458 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 GARTP22102 1010 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 CST5P28325 142 aaPredicted RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 CYP2J2P51589 502 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 CLCN3P51790 818 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 NCBP1Q09161 790 aaKnown RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 MKRN4PQ13434 485 aaPredicted RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 KCNA10Q16322 511 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 SPECC1LQ69YQ0 1117 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 APTXQ7Z2E3 356 aaKnown RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 TMC6Q7Z403 805 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 USP37Q86T82 979 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 PPFIBP1Q86W92 1011 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 VSTM4Q8IW00 320 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 FAM186BQ8IYM0 893 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 NME8Q8N427 588 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 XXYLT1Q8NBI6 393 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 ARRDC4Q8NCT1 418 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 POMGNT1Q8WZA1 660 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 KIFC3Q9BVG8 833 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 MRPL4Q9BYD3 311 aaKnown RBP11.27□□□□□ -0.61
USP3-219ENST00000561326 NFKBIZQ9BYH8 718 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 NDST4Q9H3R1 872 aa11.27□□□□□ -0.61
USP3-219ENST00000561326 KIAA1586Q9HCI6 787 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms