RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 TMC3Q7Z5M5 1100 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 MPP4Q96JB8 637 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 DHRS1Q96LJ7 313 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 HAPLN3Q96S86 360 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 OXCT2Q9BYC2 517 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 VPS54Q9P1Q0 977 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 BTBD7Q9P203 1132 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 TCEAL9Q9UHQ7 104 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 SH2B2O14492 632 aaPredicted RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 GNAT2P19087 354 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 BCAMP50895 628 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 NEK2P51955 445 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 HPCAP84074 193 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 TDRD12Q587J7 1177 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 MARK2Q7KZI7 788 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 PHLDB2Q86SQ0 1253 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 AZIN2Q96A70 460 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 AIFM3Q96NN9 605 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 FMO2Q99518 471 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 A0A1W2PQJ5 194 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 CCDC188H7C350 402 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 THOC7Q6I9Y2 204 aaKnown RBP11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 ANKRD13CQ8N6S4 541 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 ZMYND12Q9H0C1 365 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 AGPAT5Q9NUQ2 364 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 ETNK2Q9NVF9 386 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 RGPD5Q99666 1765 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 MROH7Q68CQ1 1323 aa11.67□□□□□ -0.54
CLSTN3-207ENST00000537408 TMEM247A6NEH6 219 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 GPAA1O43292 621 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 GJB6O95452 261 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 HSPD1P10809 573 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 VAV1P15498 845 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SMARCA1P28370 1054 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 INAQ16352 499 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 KLHDC7AQ5VTJ3 777 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 DAB2IPQ5VWQ8 1189 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 CATIPQ7Z7H3 387 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 DIS3L2Q8IYB7 885 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MYOCDQ8IZQ8 938 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 FAM13CQ8NE31 585 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 TMEM237Q96Q45 408 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 TRPV5Q9NQA5 729 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 TRIM75PA6NK02 468 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SMAPO00193 183 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 GTPBP6O43824 516 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 YBX3P16989 372 aaKnown RBP eCLIP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ADORA1P30542 326 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 HOXD12P35452 270 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 CCNFP41002 786 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 CD97P48960 835 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ZCWPW2Q504Y3 356 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 HSP90AA5PQ58FG0 334 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SCUBE1Q8IWY4 988 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ZNF784Q8NCA9 323 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MGARPQ8TDB4 240 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 NAT14Q8WUY8 206 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ESR2Q92731 530 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SLC26A6Q9BXS9 759 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 GPHNQ9NQX3 736 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MCM9Q9NXL9 1143 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ANGPTL2Q9UKU9 493 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MRC1P22897 1456 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 THSD7AQ9UPZ6 1657 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MYH8P13535 1937 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 MARK3P27448 753 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 EHHADHQ08426 723 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 FSTL1Q12841 308 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 TMEM132AQ24JP5 1023 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 RNF43Q68DV7 783 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 HPS5Q9UPZ3 1129 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 DYNC1LI1Q9Y6G9 523 aaKnown RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 NRAPQ86VF7 1730 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 CCDC160A6NGH7 325 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 KCNK3O14649 394 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 FTCDO95954 541 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 ZCCHC18P0CG32 403 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 RGS2P41220 211 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SERPINB8P50452 374 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 BTG3Q14201 252 aaPredicted RBP11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 DEFB115Q30KQ5 88 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 STAG2Q8N3U4 1231 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 TUBGCP2Q9BSJ2 902 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 CNNM2Q9H8M5 875 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 AIPL1Q9NZN9 384 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 STX8Q9UNK0 236 aa11.66□□□□□ -0.54
CLSTN3-207ENST00000537408 SMIM31A0A1B0GVY4 71 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 HNRNPCL1O60812 293 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 PALMO75781 387 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 DCTN3O75935 186 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 CDK7P50613 346 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 WTAPQ15007 396 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 TRADDQ15628 312 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 DDX42Q86XP3 938 aaKnown RBP eCLIP11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 TUBGCP5Q96RT8 1024 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 HAUS7Q99871 368 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 NOC4LQ9BVI4 516 aaKnown RBP11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 SLITRK6Q9H5Y7 841 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 ARMT1Q9H993 441 aa11.65□□□□□ -0.54
CLSTN3-207ENST00000537408 GBA2Q9HCG7 927 aaPredicted RBP11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms