RNA–Protein interactions for RNA: ENST00000527889.5

CD44-226, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-226ENST00000527889 TMEM47Q9BQJ4 181 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 ALG1Q9BT22 464 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 RUSC1Q9BVN2 902 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 TARS2Q9BW92 718 aaKnown RBP4.75□□□□□ -1.65
CD44-226ENST00000527889 TMEM39BQ9GZU3 492 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 CPVLQ9H3G5 476 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 ZNF287Q9HBT7 754 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 TCP11L1Q9NUJ3 509 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 LMBRD1Q9NUN5 540 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 RNF181Q9P0P0 153 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 SWAP70Q9UH65 585 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 TCEAL9Q9UHQ7 104 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 CNOT7Q9UIV1 285 aaKnown RBP4.75□□□□□ -1.65
CD44-226ENST00000527889 KCNG1Q9UIX4 513 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 MKL2Q9ULH7 1088 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 MAPRE3Q9UPY8 281 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 KIF3AQ9Y496 699 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 TRIOBPQ9H2D6 2365 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 A0A0G2JMZ2 1700 aa4.75□□□□□ -1.65
CD44-226ENST00000527889 TRIP11Q15643 1979 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 STK36Q9NRP7 1315 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 TRBV23-1A0A0A0MS06 115 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 TRAV20A0A0B4J274 112 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 IGKV6D-41A0A0C4DH26 115 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CCDC196A0A1B0GTZ2 297 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 TTC36A6NLP5 189 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 KIF28PB7ZC32 967 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 GOLGA6L22H0YM25 854 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 AGRPO00253 132 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 ENTPD3O75355 529 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 ITGB2P05107 769 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 GOLGA8HP0CJ92 632 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CALM1P0DP23 149 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CALM2P0DP24 149 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CALM3P0DP25 149 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 TOP1P11387 765 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 ALAS2P22557 587 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 RPS12P25398 132 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 GRK4P32298 578 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 ZNF143P52747 638 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 RCAN1P53805 252 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 PMS1P54277 932 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 ZNF280AP59817 542 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 JAG1P78504 1218 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CEBPZQ03701 1054 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 RING1Q06587 406 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 FOXD4Q12950 439 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 MYBPC2Q14324 1141 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 RRP1BQ14684 758 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 GRM4Q14833 912 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 SEPT2Q15019 361 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 PKN1Q16512 942 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 NFE2Q16621 373 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 SLC35G1Q2M3R5 365 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CERKLQ49MI3 558 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 ZC3H12AQ5D1E8 599 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 KRT40Q6A162 431 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 TXNDC11Q6PKC3 985 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 MIGA2Q7L4E1 593 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 PPFIBP1Q86W92 1011 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 C12orf40Q86WS4 652 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 DGKHQ86XP1 1220 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 SRBD1Q8N5C6 995 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 IL22RA1Q8N6P7 574 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 NUDT8Q8WV74 236 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 FAM151AQ8WW52 585 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 ANKS1AQ92625 1134 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 SHISA4Q96DD7 197 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CDC6Q99741 560 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 MRPL4Q9BYD3 311 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 FTOQ9C0B1 505 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-226ENST00000527889 DHX36Q9H2U1 1008 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 XPO5Q9HAV4 1204 aaKnown RBP eCLIP4.74□□□□□ -1.65
CD44-226ENST00000527889 OSGEPQ9NPF4 335 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 RBM28Q9NW13 759 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 MTMR4Q9NYA4 1195 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 VPS54Q9P1Q0 977 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 FRMD4AQ9P2Q2 1039 aaPredicted RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 PI4KBQ9UBF8 816 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 CLIP2Q9UDT6 1046 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 MAD2L2Q9UI95 211 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 ISY1Q9ULR0 285 aaKnown RBP4.74□□□□□ -1.65
CD44-226ENST00000527889 KCNJ14Q9UNX9 436 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 PCDHGC5Q9Y5F6 944 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 BAHCC1Q9P281 2608 aa4.74□□□□□ -1.65
CD44-226ENST00000527889 FRMPD2Q68DX3 1309 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 LRRC37A2A6NM11 1700 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 DNAJC25-GNG10A0A024R161 153 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 PRAMEF27A3QJZ7 478 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 H7C1D1 291 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 LINC01387J3KSC0 135 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 RNF225M0QZC1 329 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 TM4SF5O14894 197 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 PRPF3O43395 683 aaKnown RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 MYO1BO43795 1136 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 RGS9O75916 674 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 DDNO94850 711 aaPredicted RBP4.73□□□□□ -1.65
CD44-226ENST00000527889 ZRANB2O95218 330 aaKnown RBP eCLIP4.73□□□□□ -1.65
CD44-226ENST00000527889 DEXIO95424 95 aa4.73□□□□□ -1.65
CD44-226ENST00000527889 EYA4O95677 639 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms