RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 IFT22Q9H7X7 185 aa9.05□□□□□ -0.96
SDCBP-208ENST00000520228 ACSS2Q9NR19 701 aa9.05□□□□□ -0.96
SDCBP-208ENST00000520228 BTBD7Q9P203 1132 aa9.05□□□□□ -0.96
SDCBP-208ENST00000520228 FAN1Q9Y2M0 1017 aa9.05□□□□□ -0.96
SDCBP-208ENST00000520228 THSD7AQ9UPZ6 1657 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 NPC1L1Q9UHC9 1359 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 SLC9A1P19634 815 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 AOAHP28039 575 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 LIMS1P48059 325 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 ITGA1P56199 1179 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 EIF4A2Q14240 407 aaKnown RBP9.04□□□□□ -0.96
SDCBP-208ENST00000520228 SSPNQ14714 243 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 TMEM132BQ14DG7 1078 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 DEFB132Q7Z7B7 95 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 FAM129CQ86XR2 697 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 ASB15Q8WXK1 588 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 GPR101Q96P66 508 aaPredicted RBP9.04□□□□□ -0.96
SDCBP-208ENST00000520228 SPTLC3Q9NUV7 552 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 SMG5Q9UPR3 1016 aaKnown RBP9.04□□□□□ -0.96
SDCBP-208ENST00000520228 IRAK3Q9Y616 596 aa9.04□□□□□ -0.96
SDCBP-208ENST00000520228 PRAMEF25A6NGN4 478 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 NFIBO00712 420 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 FOXP2O15409 715 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 PLA2G1BP04054 148 aaKnown RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 ENO2P09104 434 aaPredicted RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 ID4P47928 161 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 FNTBP49356 437 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 MTHFSP49914 203 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 KPNA1P52294 538 aaPredicted RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 IL2P60568 153 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 ADAM9Q13443 819 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 SART3Q15020 963 aaKnown RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 ZNF174Q15697 407 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 DDX42Q86XP3 938 aaKnown RBP eCLIP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 DTX3Q8N9I9 347 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 ZCRB1Q8TBF4 217 aaKnown RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 USP7Q93009 1102 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 C16orf92Q96LL3 132 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 TTC1Q99614 292 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 SLC38A3Q99624 504 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 C11orf84Q9BUA3 381 aaPredicted RBP9.03□□□□□ -0.96
SDCBP-208ENST00000520228 EMC7Q9NPA0 242 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 OVOS2A0A0G2JMS6 1433 aa9.03□□□□□ -0.96
SDCBP-208ENST00000520228 EP400Q96L91 3159 aa9.02□□□□□ -0.96
SDCBP-208ENST00000520228 ZNF839A8K0R7 811 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 BRINP1O60477 761 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 CYP17A1P05093 508 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 MMEP08473 750 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 PTX3P26022 381 aaPredicted RBP9.02□□□□□ -0.97
SDCBP-208ENST00000520228 PFKPQ01813 784 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 OCRLQ01968 901 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 FOXRED1Q96CU9 486 aaPredicted RBP9.02□□□□□ -0.97
SDCBP-208ENST00000520228 PCIF1Q9H4Z3 704 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 ATP8A1Q9Y2Q0 1164 aa9.02□□□□□ -0.97
SDCBP-208ENST00000520228 TCAF2A6NFQ2 919 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 MPIG6BO95866 241 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 NCLP19338 710 aaKnown RBP9.01□□□□□ -0.97
SDCBP-208ENST00000520228 SMAD3P84022 425 aaKnown RBP9.01□□□□□ -0.97
SDCBP-208ENST00000520228 DDX10Q13206 875 aaKnown RBP9.01□□□□□ -0.97
SDCBP-208ENST00000520228 STAT4Q14765 748 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 RTP5Q14D33 572 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 SMAD2Q15796 467 aaKnown RBP9.01□□□□□ -0.97
SDCBP-208ENST00000520228 TNS2Q63HR2 1409 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 VASNQ6EMK4 673 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 ESRP1Q6NXG1 681 aaKnown RBP9.01□□□□□ -0.97
SDCBP-208ENST00000520228 TMC5Q6UXY8 1006 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 LHFPL2Q6ZUX7 228 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 FNIP1Q8TF40 1166 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 GBP4Q96PP9 640 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 TMEM209Q96SK2 561 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 ZMAT4Q9H898 229 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 DLL4Q9NR61 685 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 ASB1Q9Y576 335 aa9.01□□□□□ -0.97
SDCBP-208ENST00000520228 BCL9O00512 1426 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 GOLGA6L22H0YM25 854 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 CPEP16870 476 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 PI3P19957 117 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 IL13P35225 146 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 PHC1P78364 1004 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 CAP1Q01518 475 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 DLX2Q07687 328 aaPredicted RBP9□□□□□ -0.97
SDCBP-208ENST00000520228 EPHA7Q15375 998 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 PTF1AQ7RTS3 328 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 RTN4RL1Q86UN2 441 aaPredicted RBP9□□□□□ -0.97
SDCBP-208ENST00000520228 KYQ8NBH2 561 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 IGDCC4Q8TDY8 1250 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 SCYL1Q96KG9 808 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 SLC39A2Q9NP94 309 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 APOBEC2Q9Y235 224 aaKnown RBP9□□□□□ -0.97
SDCBP-208ENST00000520228 KCTD3Q9Y597 815 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 KIF20BQ96Q89 1820 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 MEGF6O75095 1541 aa9□□□□□ -0.97
SDCBP-208ENST00000520228 GPR39O43194 453 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 PTGS1P23219 599 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 MC4RP32245 332 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 EZH2Q15910 746 aaKnown RBP8.99□□□□□ -0.97
SDCBP-208ENST00000520228 GPR158Q5T848 1215 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 STK32CQ86UX6 486 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 CAMKK2Q96RR4 588 aa8.99□□□□□ -0.97
SDCBP-208ENST00000520228 MCM8Q9UJA3 840 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms