RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, humanhuman

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-208ENST00000486758 RFX8Q6ZV50 586 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 STXBP4Q6ZWJ1 553 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 SLFN12Q8IYM2 578 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 ZNF577Q9BSK1 485 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 TTYH3Q9C0H2 523 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 DHX36Q9H2U1 1008 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 CNOT10Q9H9A5 744 aaKnown RBP13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 FBXO28Q9NVF7 368 aa13.29□□□□□ -0.28
SHROOM3-208ENST00000486758 NDUFB10O96000 172 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 NR3C1P04150 777 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 TM4SF1P30408 202 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 SSTR3P32745 418 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 RHBDL3P58872 404 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 ELF3P78545 371 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 UAP1Q16222 522 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 MEI1Q5TIA1 1274 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 DPH6Q7L8W6 267 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 CAMKK2Q96RR4 588 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 SYT17Q9BSW7 474 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 A8MUI8 341 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 KRT15P19012 456 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 HSPA9P38646 679 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 SEPT14Q6ZU15 432 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 ARMC9Q7Z3E5 817 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 CATSPER3Q86XQ3 398 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 MTUS1Q9ULD2 1270 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 TRIM33Q9UPN9 1127 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 POC1B-GALNT4F8VUJ3 575 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 THAP12O43422 761 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 EIF2AK2P19525 551 aaKnown RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 CASP5P51878 434 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 SATB1Q01826 763 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 FAM102BQ5T8I3 360 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 CENPPQ6IPU0 288 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 LONP2Q86WA8 852 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 LMNTD2Q8IXW0 634 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 CERS5Q8N5B7 392 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 AGAP11Q8TF27 550 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 NAP1L3Q99457 506 aaPredicted RBP13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 FAM118BQ9BPY3 351 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 USTQ9Y2C2 406 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 GJA3Q9Y6H8 435 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 ABCB11O95342 1321 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 PKD1L3Q7Z443 1732 aa13.28□□□□□ -0.28
SHROOM3-208ENST00000486758 GALCP54803 685 aa13.27□□□□□ -0.28
SHROOM3-208ENST00000486758 ZNF571Q7Z3V5 609 aaPredicted RBP13.27□□□□□ -0.28
SHROOM3-208ENST00000486758 TCHPQ9BT92 498 aa13.27□□□□□ -0.28
SHROOM3-208ENST00000486758 CCDC188H7C350 402 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 LGR5O75473 907 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 POLR2MP0CAP2 368 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 UCHL3P15374 230 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 DRP2Q13474 957 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 MIER3Q7Z3K6 550 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 UBL4BQ8N7F7 174 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 BAP1Q92560 729 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 CCDC17Q96LX7 622 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 SEMA4AQ9H3S1 761 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 ECE2O60344 883 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 GRIN3BO60391 1043 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 GCLMP48507 274 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 USP11P51784 963 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 STAT2P52630 851 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 PLCB3Q01970 1234 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 DDR1Q08345 913 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 KCNMA1Q12791 1236 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 CRYMQ14894 314 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 OSBPL1AQ9BXW6 950 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 CCPG1Q9ULG6 757 aa13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 TRPM3Q9HCF6 1732 aaPredicted RBP13.27□□□□□ -0.29
SHROOM3-208ENST00000486758 TLR2O60603 784 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 GNA14O95837 355 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 GBP1P32455 592 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 PDE6CP51160 858 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 MTM1Q13496 603 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 RC3H1Q5TC82 1133 aaKnown RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 C18orf8Q96DM3 657 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 UBE2TQ9NPD8 197 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 NAGPAQ9UK23 515 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 F8VZ95 297 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 ATMINO43313 823 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 RASSF9O75901 435 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 CYP11B2P19099 503 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 CCNHP51946 323 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 KNOP1Q1ED39 458 aaKnown RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 TMC3Q7Z5M5 1100 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 EGFL6Q8IUX8 553 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 ACER1Q8TDN7 264 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 INPP4AQ96PE3 977 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 EIF2AK1Q9BQI3 630 aaKnown RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 RAD23BP54727 409 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 TMED2Q15363 201 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 EAPPQ56P03 285 aaPredicted RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 NLGN1Q8N2Q7 840 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 TATDN2Q93075 761 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 PURBQ96QR8 312 aaKnown RBP13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 EHMT1Q9H9B1 1298 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 GLI3P10071 1580 aa13.26□□□□□ -0.29
SHROOM3-208ENST00000486758 SPAG7O75391 227 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 SHMT1P34896 483 aa13.25□□□□□ -0.29
SHROOM3-208ENST00000486758 ADCY8P40145 1251 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms