RNA–Protein interactions for RNA: ENST00000477528.5

HDAC6-220, Transcript of histone deacetylase 6, humanhuman

TSL 1 (best)

Gene HDAC6, Length 4,832 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-220ENST00000477528 TEX2Q8IWB9 1127 aa15.71■□□□□ 0.11
HDAC6-220ENST00000477528 MAP7D3Q8IWC1 876 aa15.71■□□□□ 0.11
HDAC6-220ENST00000477528 ARHGAP20Q9P2F6 1191 aa15.71■□□□□ 0.11
HDAC6-220ENST00000477528 NXF1Q9UBU9 619 aaKnown RBP15.71■□□□□ 0.11
HDAC6-220ENST00000477528 HPCAL4Q9UM19 191 aa15.71■□□□□ 0.11
HDAC6-220ENST00000477528 A0A087WUV0 522 aaPredicted RBP15.71■□□□□ 0.1
HDAC6-220ENST00000477528 GOLGA8SH3BPF8 625 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 SGK1O00141 431 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 RTN2O75298 545 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 PLA2G4AP47712 749 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 IREB2P48200 963 aaKnown RBP15.71■□□□□ 0.1
HDAC6-220ENST00000477528 ATP11AP98196 1134 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 HAUS1Q96CS2 278 aa15.71■□□□□ 0.1
HDAC6-220ENST00000477528 RNPC3Q96LT9 517 aaKnown RBP15.71■□□□□ 0.1
HDAC6-220ENST00000477528 HGSO14964 777 aaPredicted RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 STAMBPO95630 424 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 IFNAR2P48551 515 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 APOBEC3HQ6NTF7 200 aaKnown RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 CAPN12Q6ZSI9 719 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 SLC35G2Q8TBE7 412 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 ACER1Q8TDN7 264 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 GGPS1O95749 300 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 KCNH7Q9NS40 1196 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.7■□□□□ 0.11e-6■■■■■ 27.3
HDAC6-220ENST00000477528 SLC9A2Q9UBY0 812 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 AKT3Q9Y243 479 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 ECE1P42892 770 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 EAPPQ56P03 285 aaPredicted RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 AMACRQ9UHK6 382 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 INTUQ9ULD6 942 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 CAPN6Q9Y6Q1 641 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 SLCO1A2P46721 670 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 SNRPFP62306 86 aaKnown RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 DHX34Q14147 1143 aaKnown RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 LRRN4CLQ8ND94 238 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 JPH1Q9HDC5 661 aaPredicted RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 SMARCAL1Q9NZC9 954 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.7■□□□□ 0.1
HDAC6-220ENST00000477528 TMX2Q9Y320 296 aa15.7■□□□□ 0.1
HDAC6-220ENST00000477528 A0A087X0T9 212 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 WNT7AO00755 349 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 P4HA2O15460 535 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 KLRC4O43908 158 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 DGAT1O75907 488 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TMEM253P0C7T8 217 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 FAM228BP0C875 321 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TBXAS1P24557 533 aaPredicted RBP15.69■□□□□ 0.1
HDAC6-220ENST00000477528 NEDD9Q14511 834 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TRIP13Q15645 432 aaPredicted RBP15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TRIM59Q8IWR1 403 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 CTAGE3PQ8IX95 158 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 AGBL3Q8NEM8 1001 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 AGBL1Q96MI9 1066 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 IDI2Q9BXS1 227 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 RSPH10B2B2RC85 870 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 RSPH10BP0C881 870 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 CALRP27797 417 aaKnown RBP15.69■□□□□ 0.1
HDAC6-220ENST00000477528 BAATQ14032 418 aaPredicted RBP15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TMEM270Q6UE05 265 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 PTF1AQ7RTS3 328 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 ZNF354CQ86Y25 554 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 ATP6V1G3Q96LB4 118 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 AGPAT3Q9NRZ7 376 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 LRRD1A4D1F6 860 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 ZRANB2O95218 330 aaKnown RBP eCLIP15.69■□□□□ 0.1
HDAC6-220ENST00000477528 MYBL1P10243 752 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 PON1P27169 355 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 RFX6Q8HWS3 928 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 GPATCH11Q8N954 259 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 NUDT12Q9BQG2 462 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 UNC45AQ9H3U1 944 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 CYP26A1O43174 497 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 MEA1Q16626 185 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 SH2D3AQ9BRG2 576 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 TACC3Q9Y6A5 838 aa15.69■□□□□ 0.1
HDAC6-220ENST00000477528 ICAM1P05362 532 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 OSTNP61366 133 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 MAPK6Q16659 721 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 CYP4F22Q6NT55 531 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 ERICH1Q86X53 443 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 TMEM35BQ8NCS4 154 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 CFAP57Q96MR6 1250 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 RPF1Q9H9Y2 349 aaKnown RBP15.68■□□□□ 0.1
HDAC6-220ENST00000477528 SPDYE2BA6NHP3 402 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 SPDYE6P0CI01 402 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 TROVE2P10155 538 aaKnown RBP eCLIP15.68■□□□□ 0.1
HDAC6-220ENST00000477528 HMGCS2P54868 508 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 COG2Q14746 738 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 USP38Q8NB14 1042 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 PSMD1Q99460 953 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 FRMD4AQ9P2Q2 1039 aaPredicted RBP15.68■□□□□ 0.1
HDAC6-220ENST00000477528 LCMT1Q9UIC8 334 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 NAGPAQ9UK23 515 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 ARFGEF2Q9Y6D5 1785 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 POC1B-GALNT4F8VUJ3 575 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 I3L4J1 428 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 KIAA0391O15091 583 aaKnown RBP15.68■□□□□ 0.1
HDAC6-220ENST00000477528 SUN1O94901 812 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 NR3C2P08235 984 aa15.68■□□□□ 0.1
HDAC6-220ENST00000477528 MARK3P27448 753 aa15.68■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms