RNA–Protein interactions for RNA: ENST00000473533.6

HERC4-209, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 1 (best)

Gene HERC4, Length 3,593 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-209ENST00000473533 SREBF1P36956 1147 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 RHBDL3P58872 404 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 IRX1P78414 480 aaPredicted RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 STRN3Q13033 797 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 SETDB1Q15047 1291 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 ECM1Q16610 540 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 QPCTQ16769 361 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 DPY19L2P1Q6NXN4 242 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 CATSPER3Q86XQ3 398 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 CCDC105Q8IYK2 499 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 TEX9Q8N6V9 391 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 GLIS3Q8NEA6 775 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 RBM46Q8TBY0 533 aaKnown RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 ATP8B4Q8TF62 1192 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 TRIM11Q96F44 468 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 ZSWIM1Q9BR11 485 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 TRIM6Q9C030 488 aaPredicted RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 AZI2Q9H6S1 392 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 EBF2Q9HAK2 575 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 NYAP2Q9P242 653 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 RPL26L1Q9UNX3 145 aaKnown RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 SBDSQ9Y3A5 250 aaKnown RBP eCLIP6.59□□□□□ -1.35
HERC4-209ENST00000473533 AHDC1Q5TGY3 1603 aaPredicted RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 FRMPD4Q14CM0 1322 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 CYP3A4P08684 503 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 ITGA4P13612 1032 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 NQO1P15559 274 aaKnown RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 PABPC4Q13310 644 aaKnown RBP eCLIP6.59□□□□□ -1.35
HERC4-209ENST00000473533 ARSHQ5FYA8 562 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 GLYCTKQ8IVS8 523 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 MYCT1Q8N699 235 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 CNBD1Q8NA66 436 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 MARCH10Q8NA82 808 aaPredicted RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 LINC00116Q8NCU8 138 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 ETNPPLQ8TBG4 499 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 KIFAP3Q92845 792 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 TRIM51Q9BSJ1 452 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 WDR11Q9BZH6 1224 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 TRIM31Q9BZY9 425 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 KANSL2Q9H9L4 492 aa6.59□□□□□ -1.35
HERC4-209ENST00000473533 EPB41L3Q9Y2J2 1087 aaPredicted RBP6.59□□□□□ -1.35
HERC4-209ENST00000473533 CDK5RAP2Q96SN8 1893 aa6.59□□□□□ -1.36
HERC4-209ENST00000473533 PMM2O15305 246 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 RIPK2O43353 540 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SNX3O60493 162 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 TCEA3O75764 348 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 VCAM1P19320 739 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ALDH3A1P30838 453 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 RWDD2BP57060 319 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 TRADDQ15628 312 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 CCDC137Q6PK04 289 aaKnown RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 POTEGQ6S5H5 508 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ANKRD35Q8N283 1001 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 LNX1Q8TBB1 728 aaPredicted RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 TMEM174Q8WUU8 243 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ART4Q93070 314 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 MKL1Q969V6 931 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 NACC1Q96RE7 527 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ELAC2Q9BQ52 826 aaKnown RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 TIPINQ9BVW5 301 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 UBN1Q9NPG3 1134 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SNX24Q9Y343 169 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 LOXHD1Q8IVV2 1947 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 COL4A1P02462 1669 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 COL16A1Q07092 1604 aaPredicted RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 STRCQ7RTU9 1775 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SBF2Q86WG5 1849 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 F8W031 263 aaPredicted RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 ATP2C2O75185 946 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 LMNAP02545 664 aaKnown RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 ALAS1P13196 640 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 TM4SF1P30408 202 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 COPS2P61201 443 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SLC29A2Q14542 456 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 NAA25Q14CX7 972 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 QRICH1Q2TAL8 776 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 PRR16Q569H4 304 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SPDYAQ5MJ70 313 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 PNMA8AQ86V59 439 aaPredicted RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 FBXO11Q86XK2 927 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 FAM178BQ8IXR5 827 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 LRRC34Q8IZ02 419 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SYCP3Q8IZU3 236 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 BANK1Q8NDB2 785 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 KLHL29Q96CT2 875 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 CELF4Q9BZC1 486 aaKnown RBP6.58□□□□□ -1.36
HERC4-209ENST00000473533 CCDC113Q9H0I3 377 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 RXFP1Q9HBX9 757 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP6.58□□□□□ -1.364e-7■□□□□ 10.5
HERC4-209ENST00000473533 SENP1Q9P0U3 644 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 CTNNAL1Q9UBT7 734 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 C15orf41Q9Y2V0 281 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ALG6Q9Y672 507 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ABLIM1O14639 778 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 SPOPO43791 374 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 CLTAP09496 248 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ALADP13716 330 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 AKR1B1P15121 316 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ADRA2BP18089 450 aa6.58□□□□□ -1.36
HERC4-209ENST00000473533 ABCB4P21439 1286 aa6.58□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms