RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 POTEB3A0JP26 581 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 WDR64B1ANS9 1081 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 MAPTP10636 758 aaKnown RBP13.01□□□□□ -0.33
USP54-209ENST00000464635 CD44P16070 742 aaKnown RBP13.01□□□□□ -0.33
USP54-209ENST00000464635 GAP43P17677 238 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 GUCY2CP25092 1073 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 FANCCQ00597 558 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 LRRC63Q05C16 580 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 PLEKHG4Q58EX7 1191 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 ISM2Q6H9L7 571 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 POTEBQ6S5H4 581 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 MIER3Q7Z3K6 550 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 SEPT1Q8WYJ6 367 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 STAMQ92783 540 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 ZBTB10Q96DT7 871 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 MED15Q96RN5 788 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 PCYT2Q99447 389 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 UNC45AQ9H3U1 944 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 THAP9Q9H5L6 903 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 OLFML3Q9NRN5 406 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 ANKEF1Q9NU02 776 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 FANCLQ9NW38 375 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 THEGQ9P2T0 379 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 KCNG1Q9UIX4 513 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 MTCH2Q9Y6C9 303 aa13.01□□□□□ -0.33
USP54-209ENST00000464635 RALGAPA2Q2PPJ7 1873 aa13□□□□□ -0.33
USP54-209ENST00000464635 EMSYQ7Z589 1322 aa13□□□□□ -0.33
USP54-209ENST00000464635 E9PMD0 336 aa13□□□□□ -0.33
USP54-209ENST00000464635 ATG7O95352 703 aa13□□□□□ -0.33
USP54-209ENST00000464635 GJB5O95377 273 aa13□□□□□ -0.33
USP54-209ENST00000464635 SCP2P22307 547 aa13□□□□□ -0.33
USP54-209ENST00000464635 EEF1GP26641 437 aaKnown RBP13□□□□□ -0.33
USP54-209ENST00000464635 CASP1P29466 404 aa13□□□□□ -0.33
USP54-209ENST00000464635 QARSP47897 775 aaKnown RBP13□□□□□ -0.33
USP54-209ENST00000464635 GSDMDP57764 484 aa13□□□□□ -0.33
USP54-209ENST00000464635 ITGB3BPQ13352 177 aaPredicted RBP13□□□□□ -0.33
USP54-209ENST00000464635 GIT2Q14161 759 aa13□□□□□ -0.33
USP54-209ENST00000464635 IKBKEQ14164 716 aa13□□□□□ -0.33
USP54-209ENST00000464635 ARSHQ5FYA8 562 aa13□□□□□ -0.33
USP54-209ENST00000464635 PPP4R3CPQ6ZMV5 832 aa13□□□□□ -0.33
USP54-209ENST00000464635 FAM114A1Q8IWE2 563 aa13□□□□□ -0.33
USP54-209ENST00000464635 ANKRD20A12PQ8NF67 263 aa13□□□□□ -0.33
USP54-209ENST00000464635 TMEM174Q8WUU8 243 aa13□□□□□ -0.33
USP54-209ENST00000464635 NELFBQ8WX92 580 aa13□□□□□ -0.33
USP54-209ENST00000464635 KCNN1Q92952 543 aa13□□□□□ -0.33
USP54-209ENST00000464635 PLIN2Q99541 437 aa13□□□□□ -0.33
USP54-209ENST00000464635 ZBED2Q9BTP6 218 aa13□□□□□ -0.33
USP54-209ENST00000464635 PANK4Q9NVE7 773 aa13□□□□□ -0.33
USP54-209ENST00000464635 LIMA1Q9UHB6 759 aaKnown RBP13□□□□□ -0.33
USP54-209ENST00000464635 MTUS1Q9ULD2 1270 aa13□□□□□ -0.33
USP54-209ENST00000464635 PPME1Q9Y570 386 aa13□□□□□ -0.33
USP54-209ENST00000464635 PCDHA2Q9Y5H9 948 aa13□□□□□ -0.33
USP54-209ENST00000464635 PCDHA10Q9Y5I2 948 aa13□□□□□ -0.33
USP54-209ENST00000464635 COL4A3BPQ9Y5P4 624 aa13□□□□□ -0.33
USP54-209ENST00000464635 SPTBN5Q9NRC6 3674 aaKnown RBP13□□□□□ -0.33
USP54-209ENST00000464635 MYH9P35579 1960 aaKnown RBP13□□□□□ -0.33
USP54-209ENST00000464635 KIAA1671Q9BY89 1806 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 A0A087WWV3 80 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 LPXNO60711 386 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 CDK11BP21127 795 aaKnown RBP12.99□□□□□ -0.33
USP54-209ENST00000464635 ZNF131P52739 623 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 UBASH3AP57075 661 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 PSMC5P62195 406 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 STK4Q13043 487 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 PPFIA1Q13136 1202 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 GRIK4Q16099 956 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 TJAP1Q5JTD0 557 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 RINT1Q6NUQ1 792 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 TTI2Q6NXR4 508 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 C1orf186Q6ZWK4 172 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 MYOCDQ8IZQ8 938 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 GDPD5Q8WTR4 605 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 P2RX5Q93086 422 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 GJA10Q969M2 543 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 DYDC2Q96IM9 177 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 UIMC1Q96RL1 719 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 JPH1Q9HDC5 661 aaPredicted RBP12.99□□□□□ -0.33
USP54-209ENST00000464635 SLC9A2Q9UBY0 812 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 EVPLQ92817 2033 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 TTC28Q96AY4 2481 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 COL4A6Q14031 1691 aa12.99□□□□□ -0.33
USP54-209ENST00000464635 UBE4BO95155 1302 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 NRCAMQ92823 1304 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 A0A1B0GTH6 734 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 LOC101059915A0A1B0GWI6 518 aaPredicted RBP12.98□□□□□ -0.33
USP54-209ENST00000464635 LINC01553A4QN01 128 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 EIF3DO15371 548 aaKnown RBP eCLIP12.98□□□□□ -0.33
USP54-209ENST00000464635 EFCAB14O75071 495 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 CAND2O75155 1236 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 CHRNA1P02708 482 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 GNAT1P11488 350 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ABCD1P33897 745 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ACTR2P61160 394 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 IGBP1P78318 339 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 PLCB2Q00722 1185 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 MGAT3Q09327 533 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 COASYQ13057 564 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 ALCAMQ13740 583 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 NR1I3Q14994 352 aa12.98□□□□□ -0.33
USP54-209ENST00000464635 NFIL3Q16649 462 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms