RNA–Protein interactions for RNA: ENST00000462658.1

UBE4B-204, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-204ENST00000462658 LSAMPQ13449 338 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 TTC39AQ5SRH9 613 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 ZNF605Q86T29 641 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 SLC7A14Q8TBB6 771 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 PPIL4Q8WUA2 492 aaKnown RBP eCLIP8.76□□□□□ -1.01
UBE4B-204ENST00000462658 PTPRN2Q92932 1015 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 RBM17Q96I25 401 aaKnown RBP8.76□□□□□ -1.01
UBE4B-204ENST00000462658 SYT17Q9BSW7 474 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 CLDND1Q9NY35 253 aa8.76□□□□□ -1.01
UBE4B-204ENST00000462658 BRCA1P38398 1863 aaKnown RBP8.76□□□□□ -1.01
UBE4B-204ENST00000462658 TLDC2A0PJX2 215 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 KLRG2A4D1S0 409 aaPredicted RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 NTRK1P04629 796 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 IFIT1P09914 478 aaKnown RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 GLI4P10075 376 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 SLC5A1P13866 664 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 ANP32AP39687 249 aaKnown RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 GPR85P60893 370 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 GABREP78334 506 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 GRAPQ13588 217 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 RAB3GAP1Q15042 981 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 CRY2Q49AN0 593 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 LBX2Q6XYB7 198 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 IRF2BP1Q8IU81 584 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 IFNL3Q8IZI9 196 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 GRAPLQ8TC17 118 aaPredicted RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 RPGRQ92834 1020 aaKnown RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 TRMT2BQ96GJ1 504 aaKnown RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 TMEM169Q96HH4 297 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 BRIP1Q9BX63 1249 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 C22orf23Q9BZE7 217 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 NCOA5Q9HCD5 579 aaKnown RBP8.75□□□□□ -1.01
UBE4B-204ENST00000462658 HCFC2Q9Y5Z7 792 aa8.75□□□□□ -1.01
UBE4B-204ENST00000462658 NRXN2Q9P2S2 1712 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 CCDC163A0A0D9SF12 145 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 ZC3H12DA2A288 527 aaKnown RBP8.74□□□□□ -1.01
UBE4B-204ENST00000462658 SNAP23O00161 211 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 HIP1O00291 1037 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 MPOP05164 745 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 GTF2A2P52657 109 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 UBE4AQ14139 1066 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 C21orf62-AS1Q17RA5 79 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 RPTNQ6XPR3 784 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 MAMDC2Q7Z304 686 aaPredicted RBP8.74□□□□□ -1.01
UBE4B-204ENST00000462658 HOMER1Q86YM7 354 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 EDC3Q96F86 508 aaKnown RBP8.74□□□□□ -1.01
UBE4B-204ENST00000462658 CLUHP3Q96NS8 147 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 FSD1Q9BTV5 496 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 ANKRD2Q9GZV1 360 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 DIAPH3Q9NSV4 1193 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 KLHL14Q9P2G3 628 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 SIT1Q9Y3P8 196 aa8.74□□□□□ -1.01
UBE4B-204ENST00000462658 GOLIM4O00461 696 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 BBOX1O75936 387 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 REC8O95072 547 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 UQCRFS1P1P0C7P4 283 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 TKFCQ3LXA3 575 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 WWC2Q6AWC2 1192 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 RUFY2Q8WXA3 655 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 APPBP2Q92624 585 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 CRAMP1Q96RY5 1269 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 ZFYVE21Q9BQ24 234 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 JAM3Q9BX67 310 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 CDIP1Q9H305 208 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 DCP1AQ9NPI6 582 aaPredicted RBP8.73□□□□□ -1.01
UBE4B-204ENST00000462658 PAG1Q9NWQ8 432 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 SFMBT1Q9UHJ3 866 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 PCDHA9Q9Y5H5 950 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 PCDHA8Q9Y5H6 950 aa8.73□□□□□ -1.01
UBE4B-204ENST00000462658 ANKRD31Q8N7Z5 1873 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 COL4A1P02462 1669 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 LOC101059915A0A1B0GWI6 518 aaPredicted RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 F8W031 263 aaPredicted RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 AQP7O14520 342 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 SGSM2O43147 1006 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 CRTAMO95727 393 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 CYBBP04839 570 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 NPR1P16066 1061 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 PHKA1P46020 1223 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 KCNJ4P48050 445 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 PAQR3Q6TCH7 311 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 CWC27Q6UX04 472 aaKnown RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 MTDHQ86UE4 582 aaKnown RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 CABP7Q86V35 215 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 TICAM2Q86XR7 235 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 Q8N1Y9 231 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 KBTBD3Q8NAB2 608 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 PUM2Q8TB72 1066 aaKnown RBP eCLIP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 MRPL4Q9BYD3 311 aaKnown RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 EPB41L4BQ9H329 900 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 ZNF552Q9H707 407 aaPredicted RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 FAM53CQ9NYF3 392 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 TMA7Q9Y2S6 64 aaKnown RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 X6R8D5 127 aa8.72□□□□□ -1.01
UBE4B-204ENST00000462658 TNRC6CQ9HCJ0 1690 aaKnown RBP8.72□□□□□ -1.01
UBE4B-204ENST00000462658 H7BY64 318 aa8.71□□□□□ -1.02
UBE4B-204ENST00000462658 PLD2O14939 933 aa8.71□□□□□ -1.02
UBE4B-204ENST00000462658 RASGRP1O95267 797 aa8.71□□□□□ -1.02
UBE4B-204ENST00000462658 SOD2P04179 222 aa8.71□□□□□ -1.02
UBE4B-204ENST00000462658 SRGNP10124 158 aa8.71□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms