RNA–Protein interactions for RNA: ENST00000413374.1

NCKIPSD-202, Transcript of NCK interacting protein with SH3 domain, humanhuman

TSL 3

Gene NCKIPSD, Length 725 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NCKIPSD-202ENST00000413374 ZSCAN21Q9Y5A6 473 aaPredicted RBP11.32□□□□□ -0.6
NCKIPSD-202ENST00000413374 GTF3C3Q9Y5Q9 886 aa11.32□□□□□ -0.6
NCKIPSD-202ENST00000413374 MYO9BQ13459 2157 aa11.32□□□□□ -0.6
NCKIPSD-202ENST00000413374 A0A0C4DFX4 3053 aa11.32□□□□□ -0.6
NCKIPSD-202ENST00000413374 PRRC2BQ5JSZ5 2229 aaKnown RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 ARHGEF35A5YM69 484 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 PER2O15055 1255 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 LINC01565O15544 149 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 HOXA2O43364 376 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 GAS2O43903 313 aaKnown RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 XRCC6P12956 609 aaKnown RBP eCLIP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 LIG1P18858 919 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 GLRA2P23416 452 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 RPA1P27694 616 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 HOXA11P31270 313 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 ERVFC1P60507 584 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 ORC2Q13416 577 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 CAPSQ13938 189 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 TFDP1Q14186 410 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 MXD4Q14582 209 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 NAALADL2Q58DX5 795 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 UBXN11Q5T124 520 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 PADI6Q6TGC4 694 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 KCNT2Q6UVM3 1135 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 DTHD1Q6ZMT9 781 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 FAM43BQ6ZT52 329 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 CDR2LQ86X02 465 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 GADD45GIP1Q8TAE8 222 aaPredicted RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 SNX29Q8TEQ0 813 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 PLIN2Q99541 437 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 GBP3Q9H0R5 595 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 AGPAT5Q9NUQ2 364 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 DDX19AQ9NUU7 478 aaKnown RBP11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 PCDHB2Q9Y5E7 798 aa11.31□□□□□ -0.6
NCKIPSD-202ENST00000413374 LRRIQ4A6NIV6 560 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 E9PMD0 336 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 B4GALT5O43286 388 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 TSPAN1O60635 241 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 OFD1O75665 1012 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 ERLIN2O94905 339 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 SKIP12755 728 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 LAG3P18627 525 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 CA8P35219 290 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 NRIP1P48552 1158 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 FXR2P51116 673 aaKnown RBP eCLIP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 AFF1P51825 1210 aaKnown RBP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 PTENP60484 403 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 DLX2Q07687 328 aaPredicted RBP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 NCBP1Q09161 790 aaKnown RBP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 PDIA5Q14554 519 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 ZNF558Q96NG5 402 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 APOL6Q9BWW8 343 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 EIF2AQ9BY44 585 aaKnown RBP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 BHMT2Q9H2M3 363 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 DBR1Q9UK59 544 aaKnown RBP11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 USP20Q9Y2K6 914 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 HES2Q9Y543 173 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 COL4A6Q14031 1691 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 EVPLQ92817 2033 aa11.3□□□□□ -0.6
NCKIPSD-202ENST00000413374 TNFRSF10AO00220 468 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 ZC3H11AO75152 810 aaKnown RBP eCLIP11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 POMCP01189 267 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 IL9P15248 144 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 BCAR1P56945 870 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 RNASELQ05823 741 aaKnown RBP11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 MBTD1Q05BQ5 628 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 LEXMQ3ZCV2 418 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 RILPL1Q5EBL4 403 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 NOMO2Q5JPE7 1267 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 PLPP4Q5VZY2 271 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 KRT79Q5XKE5 535 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 HAUS3Q68CZ6 603 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 PTCRAQ6ISU1 281 aaPredicted RBP11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 GLB1LQ6UWU2 654 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 AGMOQ6ZNB7 445 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 ZNF280BQ86YH2 543 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 LRRC43Q8N309 656 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 BSNDQ8WZ55 320 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 PGBD4Q96DM1 585 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 PABPC5Q96DU9 382 aaKnown RBP11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 RNF39Q9H2S5 420 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 TLE6Q9H808 572 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 TLR9Q9NR96 1032 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 SPG21Q9NZD8 308 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 PUF60Q9UHX1 559 aaKnown RBP11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 TTC3P53804 2025 aa11.29□□□□□ -0.6
NCKIPSD-202ENST00000413374 MYH9P35579 1960 aaKnown RBP11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 VCANP13611 3396 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 XIRP2A4UGR9 3374 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 VPS37CA5D8V6 355 aaPredicted RBP11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 VWA3AA6NCI4 1184 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 ZNF623O75123 536 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 NPTXRO95502 500 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 SSBP05455 408 aaKnown RBP eCLIP11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 ITGA4P13612 1032 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 ARF4P18085 180 aaPredicted RBP11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 CYP11B2P19099 503 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 LTBRP36941 435 aa11.28□□□□□ -0.6
NCKIPSD-202ENST00000413374 ALDH7A1P49419 539 aaKnown RBP11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms