RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 ATP12AP54707 1039 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 EFTUD2Q15029 972 aaKnown RBP eCLIP10.38□□□□□ -0.75
CHD3-202ENST00000358181 INPP5DQ92835 1189 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 TTC17Q96AE7 1141 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 EIF3CQ99613 913 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 RNPEPQ9H4A4 650 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ZNF197O14709 1029 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 HUS1O60921 280 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 TADA2AO75478 443 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 SUPT3HO75486 399 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ENO2P09104 434 aaPredicted RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 ITGAXP20702 1163 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 DHX9Q08211 1270 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 PTGDRQ13258 359 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 USP39Q53GS9 565 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 RD3Q7Z3Z2 195 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 RHPN2Q8IUC4 686 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 PMM1Q92871 262 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 PNMA5Q96PV4 448 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 PNKPQ96T60 521 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 RPS6KB2Q9UBS0 482 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 MRFAP1Q9Y605 127 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 LOC102724428A0A0B4J2F2 783 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 SGSM2O43147 1006 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ASAP2O43150 1006 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 TSC22D2O75157 780 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 RPN1P04843 607 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 EIF2AK2P19525 551 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 SIK1P57059 783 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ARHGEF7Q14155 803 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ENAHQ8N8S7 591 aaPredicted RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 OR6P1Q8NGX9 317 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 FBXO41Q8TF61 875 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 AHCYL2Q96HN2 611 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 VPS39Q96JC1 886 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 DDX56Q9NY93 547 aaKnown RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 GFPT2O94808 682 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 HPGDP15428 266 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 PRAMEP78395 509 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ZNF235Q14590 738 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 AGBL1Q96MI9 1066 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 ZSCAN10Q96SZ4 725 aaPredicted RBP10.38□□□□□ -0.75
CHD3-202ENST00000358181 MMP19Q99542 508 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 VTI1BQ9UEU0 232 aa10.38□□□□□ -0.75
CHD3-202ENST00000358181 RALAP11233 206 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 GPBP1L1Q9HC44 474 aaPredicted RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 ZBTB1Q9Y2K1 713 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 KIAA0232Q92628 1395 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 MAST1Q9Y2H9 1570 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 SERPINB2P05120 415 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 GTF2E2P29084 291 aaKnown RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 CACNB3P54284 484 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 TUBB4BP68371 445 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 DIS3LQ8TF46 1054 aaKnown RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 SPATA16Q9BXB7 569 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 ZNF341Q9BYN7 854 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 ABCC4O15439 1325 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 PRKAB2O43741 272 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 TNNI3P19429 210 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 NLRP12P59046 1061 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 CDC16Q13042 620 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 PKP1Q13835 747 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 ECT2Q9H8V3 914 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 COL4A3BPQ9Y5P4 624 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 WDR62O43379 1518 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 CUTAO60888 179 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 CYP19A1P11511 503 aaPredicted RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 FEN1P39748 380 aaKnown RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 GUCY2DQ02846 1103 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 ATP11CQ8NB49 1132 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 EAF2Q96CJ1 260 aaPredicted RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 SNCBQ16143 134 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 NBPF9Q3BBW0 867 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 TIGD7Q6NT04 549 aaPredicted RBP10.37□□□□□ -0.75
CHD3-202ENST00000358181 ANTXR1Q9H6X2 564 aa10.37□□□□□ -0.75
CHD3-202ENST00000358181 SPAG7O75391 227 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 ERN1O75460 977 aaKnown RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 RASSF9O75901 435 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 GSPT1P15170 499 aaKnown RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 SERPINB4P48594 390 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 NLRP14Q86W24 1093 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 SPATA2LQ8IUW3 424 aaPredicted RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 CLYBLQ8N0X4 340 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 APOL5Q9BWW9 433 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 FAM129AQ9BZQ8 928 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 EIF2AK3Q9NZJ5 1116 aaKnown RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 ARPP21Q9UBL0 812 aaPredicted RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 AURKCQ9UQB9 309 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 ATP8A1Q9Y2Q0 1164 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 IQCMA0A1B0GVH7 501 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 PSMA3P25788 255 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 WEE1P30291 646 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 FLT3P36888 993 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 BTKQ06187 659 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 ZSCAN2Q7Z7L9 614 aaPredicted RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 OGFRQ9NZT2 677 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 LARSQ9P2J5 1176 aaKnown RBP10.36□□□□□ -0.75
CHD3-202ENST00000358181 MAD2L2Q9UI95 211 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 PBRM1Q86U86 1689 aa10.36□□□□□ -0.75
CHD3-202ENST00000358181 E2F8A0AVK6 867 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms