RNA–Protein interactions for RNA: ENST00000276201.6

UPF3B-201, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3B, Length 2,378 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-201ENST00000276201 NCAPG2Q86XI2 1143 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SLAIN1Q8ND83 568 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 GIMAP7Q8NHV1 300 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 CEP63Q96MT8 703 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 TEX13BQ9BXU2 312 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 MROH8Q9H579 483 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 CNOT10Q9H9A5 744 aaKnown RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 RAVER2Q9HCJ3 691 aaKnown RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 AIPL1Q9NZN9 384 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 PP2D1A8MPX8 630 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 CCDC188H7C350 402 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 CLGNO14967 610 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 GNA14O95837 355 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SLC25A27O95847 323 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 GSTA1P08263 222 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 ECHS1P30084 290 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 MATR3P43243 847 aaKnown RBP eCLIP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SNAP25P60880 206 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SNCBQ16143 134 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SLC18A3Q16572 532 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 IFI16Q16666 785 aaKnown RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 ANKRD20A8PQ5CZ79 823 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SYDE2Q5VT97 1194 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SFMBT2Q5VUG0 894 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 TTC19Q6DKK2 380 aaPredicted RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 SNRNP48Q6IEG0 339 aaKnown RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 ZC3H3Q8IXZ2 948 aaKnown RBP11.23□□□□□ -0.61
UPF3B-201ENST00000276201 CALML4Q96GE6 196 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 TSG101Q99816 390 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 ZMYND12Q9H0C1 365 aa11.23□□□□□ -0.61
UPF3B-201ENST00000276201 ZNF536O15090 1300 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 GOLGA8HP0CJ92 632 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 FCER1AP12319 257 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CYP2B6P20813 491 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CXCR5P32302 372 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CDR1P51861 262 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 MAP2K5Q13163 448 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 SKIDA1Q1XH10 827 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CEP85LQ5SZL2 805 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 KCTD16Q68DU8 428 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 SV2BQ7L1I2 683 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 PARP9Q8IXQ6 854 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 FUKQ8N0W3 1084 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CPXCR1Q8N123 301 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 PXYLP1Q8TE99 480 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 TATDN2Q93075 761 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 JPH2Q9BR39 696 aaPredicted RBP11.22□□□□□ -0.61
UPF3B-201ENST00000276201 MMTAG2Q9BU76 263 aaKnown RBP11.22□□□□□ -0.61
UPF3B-201ENST00000276201 SLITRK6Q9H5Y7 841 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 MMRN2Q9H8L6 949 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 EHD2Q9NZN4 543 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 DDX20Q9UHI6 824 aaKnown RBP11.22□□□□□ -0.61
UPF3B-201ENST00000276201 RIPK3Q9Y572 518 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 CTDP1Q9Y5B0 961 aaPredicted RBP11.22□□□□□ -0.61
UPF3B-201ENST00000276201 IVNS1ABPQ9Y6Y0 642 aa11.22□□□□□ -0.61
UPF3B-201ENST00000276201 ESYT2A0FGR8 921 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 E7EVH7 732 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 RAD51CO43502 376 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 PALMO75781 387 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 FDX1P10109 184 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 XRCC5P13010 732 aaKnown RBP11.21□□□□□ -0.61
UPF3B-201ENST00000276201 HSD17B3P37058 310 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 RGS2P41220 211 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 FXR2P51116 673 aaKnown RBP eCLIP11.21□□□□□ -0.61
UPF3B-201ENST00000276201 USP11P51784 963 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 OAZ1P54368 228 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 PPP2R2AP63151 447 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 KCNMA1Q12791 1236 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 IFT88Q13099 833 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 ZCWPW2Q504Y3 356 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 GPATCH4Q5T3I0 446 aaKnown RBP11.21□□□□□ -0.61
UPF3B-201ENST00000276201 TRIB2Q92519 343 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 MS4A14Q96JA4 679 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 KRT12Q99456 494 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 APBA2Q99767 749 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 SPZ1Q9BXG8 430 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 ATP6V0A4Q9HBG4 840 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 FAM207AQ9NSI2 230 aaPredicted RBP11.21□□□□□ -0.61
UPF3B-201ENST00000276201 SMARCAL1Q9NZC9 954 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 SUFUQ9UMX1 484 aa11.21□□□□□ -0.61
UPF3B-201ENST00000276201 STRNO43815 780 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 MGRN1O60291 552 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 NOL4O94818 638 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 MYCP01106 439 aaPredicted RBP11.21□□□□□ -0.62
UPF3B-201ENST00000276201 INHAP05111 366 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 ADORA2AP29274 412 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 COPB2P35606 906 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 EIF3BP55884 814 aaKnown RBP11.21□□□□□ -0.62
UPF3B-201ENST00000276201 SOX10P56693 466 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 GFPT1Q06210 699 aaPredicted RBP11.21□□□□□ -0.62
UPF3B-201ENST00000276201 CRYMQ14894 314 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 CCL14Q16627 93 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 INF2Q27J81 1249 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 ASPRV1Q53RT3 343 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 RNF187Q5TA31 235 aaPredicted RBP11.21□□□□□ -0.62
UPF3B-201ENST00000276201 CYB5D1Q6P9G0 228 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 CCDC174Q6PII3 467 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 CACNA2D4Q7Z3S7 1137 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 STAG2Q8N3U4 1231 aa11.21□□□□□ -0.62
UPF3B-201ENST00000276201 RASGEF1CQ8N431 466 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms