RNA–Protein interactions for RNA: YKL054C

DEF1, Transcript of RNAPII degradation factor, yeastyeast

Gene DEF1, Length 2,217 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEF1YKL054C PRX1P34227 261 aaKnown RBP5.36□□□□□ -1.55
DEF1YKL054C YPT52P36018 234 aaKnown RBP5.36□□□□□ -1.55
DEF1YKL054C MCR1P36060 302 aaKnown RBP5.36□□□□□ -1.55
DEF1YKL054C TAD2P47058 250 aa5.36□□□□□ -1.55
DEF1YKL054C NNT1Q05874 261 aa5.36□□□□□ -1.55
DEF1YKL054C THI7Q05998 598 aa5.36□□□□□ -1.55
DEF1YKL054C YDL218WQ07629 317 aa5.36□□□□□ -1.55
DEF1YKL054C YDL109CQ12103 647 aa5.36□□□□□ -1.55
DEF1YKL054C AQY1P0CD91 305 aa5.35□□□□□ -1.55
DEF1YKL054C POF1P25576 258 aa5.35□□□□□ -1.55
DEF1YKL054C COQ3P27680 312 aa5.35□□□□□ -1.55
DEF1YKL054C ATO2P32907 282 aa5.35□□□□□ -1.55
DEF1YKL054C YJR079WP47126 109 aa5.35□□□□□ -1.55
DEF1YKL054C ORC5P50874 479 aa5.35□□□□□ -1.55
DEF1YKL054C MGA1P53050 456 aa5.35□□□□□ -1.55
DEF1YKL054C YNL140CP53910 189 aa5.35□□□□□ -1.55
DEF1YKL054C IRC4Q03036 179 aa5.35□□□□□ -1.55
DEF1YKL054C PRM15Q03262 622 aa5.35□□□□□ -1.55
DEF1YKL054C SSK1Q07084 712 aa5.35□□□□□ -1.55
DEF1YKL054C EHD3P28817 500 aa5.35□□□□□ -1.55
DEF1YKL054C CSE1P33307 960 aa5.35□□□□□ -1.55
DEF1YKL054C DBP7P36120 742 aaKnown RBP5.35□□□□□ -1.55
DEF1YKL054C RIM2P38127 377 aa5.35□□□□□ -1.55
DEF1YKL054C RBG1P39729 369 aa5.35□□□□□ -1.55
DEF1YKL054C GDS1P41913 522 aa5.35□□□□□ -1.55
DEF1YKL054C IDP2P41939 412 aa5.35□□□□□ -1.55
DEF1YKL054C MNN10P50108 393 aaKnown RBP5.35□□□□□ -1.55
DEF1YKL054C YNR048WP53740 393 aa5.35□□□□□ -1.55
DEF1YKL054C GIS1Q03833 894 aa5.35□□□□□ -1.55
DEF1YKL054C YMR114CQ04471 368 aaKnown RBP5.35□□□□□ -1.55
DEF1YKL054C AMD1P15274 810 aaKnown RBP5.34□□□□□ -1.55
DEF1YKL054C RIB5P38145 238 aa5.34□□□□□ -1.55
DEF1YKL054C RFT1P38206 574 aaPredicted RBP5.34□□□□□ -1.55
DEF1YKL054C PCL5P38794 229 aa5.34□□□□□ -1.55
DEF1YKL054C DHH1P39517 506 aaKnown RBP5.34□□□□□ -1.55
DEF1YKL054C FRT2P39734 528 aa5.34□□□□□ -1.55
DEF1YKL054C GAB1P41733 394 aa5.34□□□□□ -1.55
DEF1YKL054C ARK1P53974 638 aa5.34□□□□□ -1.55
DEF1YKL054C YDC1Q02896 317 aa5.34□□□□□ -1.55
DEF1YKL054C VPS60Q03390 229 aa5.34□□□□□ -1.55
DEF1YKL054C SPC2Q04969 178 aa5.34□□□□□ -1.55
DEF1YKL054C PLB3Q08108 686 aa5.34□□□□□ -1.55
DEF1YKL054C SGT1Q08446 395 aa5.34□□□□□ -1.55
DEF1YKL054C YOR389WQ08912 624 aa5.34□□□□□ -1.55
DEF1YKL054C ACF2Q12168 779 aa5.34□□□□□ -1.55
DEF1YKL054C NCA2Q12374 616 aa5.34□□□□□ -1.55
DEF1YKL054C PAB1P04147 577 aaKnown RBP RIP-Chip data5.33□□□□□ -1.56not detected
DEF1YKL054C DEP1P31385 405 aa5.33□□□□□ -1.56
DEF1YKL054C YKL063CP35725 167 aa5.33□□□□□ -1.56
DEF1YKL054C YCR041WP37265 110 aa5.33□□□□□ -1.56
DEF1YKL054C YBR056WP38081 501 aa5.33□□□□□ -1.56
DEF1YKL054C YHR035WP38769 630 aa5.33□□□□□ -1.56
DEF1YKL054C IRC24P40580 263 aa5.33□□□□□ -1.56
DEF1YKL054C RPL10P41805 221 aaKnown RBP5.33□□□□□ -1.56
DEF1YKL054C LSG1P53145 640 aaKnown RBP5.33□□□□□ -1.56
DEF1YKL054C YNL040WP53960 456 aaPredicted RBP5.33□□□□□ -1.56
DEF1YKL054C ZRT1P32804 376 aa5.33□□□□□ -1.56
DEF1YKL054C PHO23P50947 330 aa5.33□□□□□ -1.56
DEF1YKL054C CPD1P53314 239 aa5.33□□□□□ -1.56
DEF1YKL054C CAF40P53829 373 aa5.33□□□□□ -1.56
DEF1YKL054C CTF19Q02732 369 aa5.33□□□□□ -1.56
DEF1YKL054C SWF1Q04629 336 aa5.33□□□□□ -1.56
DEF1YKL054C SEC10Q06245 871 aa5.33□□□□□ -1.56
DEF1YKL054C EDE1P34216 1381 aa5.32□□□□□ -1.56
DEF1YKL054C RNA15P25299 296 aaPredicted RBP5.32□□□□□ -1.56
DEF1YKL054C IDH1P28834 360 aaKnown RBP RIP-Chip data5.32□□□□□ -1.56not detected
DEF1YKL054C HOM6P31116 359 aaKnown RBP5.32□□□□□ -1.56
DEF1YKL054C YEF1P32622 495 aa5.32□□□□□ -1.56
DEF1YKL054C YBR241CP38142 488 aa5.32□□□□□ -1.56
DEF1YKL054C OSH3P38713 996 aaKnown RBP5.32□□□□□ -1.56
DEF1YKL054C MST27P53176 234 aa5.32□□□□□ -1.56
DEF1YKL054C SPR6Q01684 191 aa5.32□□□□□ -1.56
DEF1YKL054C PEX10Q05568 337 aa5.32□□□□□ -1.56
DEF1YKL054C TPI1P00942 248 aaKnown RBP5.32□□□□□ -1.56
DEF1YKL054C ECM8P38246 354 aa5.32□□□□□ -1.56
DEF1YKL054C RPH1P39956 796 aa5.32□□□□□ -1.56
DEF1YKL054C YAT2P40017 923 aa5.32□□□□□ -1.56
DEF1YKL054C YPT32P51996 222 aaKnown RBP5.32□□□□□ -1.56
DEF1YKL054C CDH1P53197 566 aa5.32□□□□□ -1.56
DEF1YKL054C MRS2Q01926 470 aa5.32□□□□□ -1.56
DEF1YKL054C YMR166CQ03829 368 aa5.32□□□□□ -1.56
DEF1YKL054C YDL144CQ07589 356 aa5.32□□□□□ -1.56
DEF1YKL054C SOP4P39543 234 aaPredicted RBP5.31□□□□□ -1.56
DEF1YKL054C ICE2P40499 491 aa5.31□□□□□ -1.56
DEF1YKL054C MTM1P53320 366 aa5.31□□□□□ -1.56
DEF1YKL054C MFG1Q07684 458 aa5.31□□□□□ -1.56
DEF1YKL054C YLR012CQ07927 99 aa5.31□□□□□ -1.56
DEF1YKL054C THI20Q08224 551 aa5.31□□□□□ -1.56
DEF1YKL054C TUS1Q06412 1307 aa5.31□□□□□ -1.56
DEF1YKL054C MTF1P14908 341 aaKnown RBP5.31□□□□□ -1.56
DEF1YKL054C URA6P15700 204 aa5.31□□□□□ -1.56
DEF1YKL054C RPB8P20436 146 aa5.31□□□□□ -1.56
DEF1YKL054C SPO11P23179 398 aa5.31□□□□□ -1.56
DEF1YKL054C BMH1P29311 267 aaKnown RBP5.31□□□□□ -1.56
DEF1YKL054C CDC13P32797 924 aaKnown RBP5.31□□□□□ -1.56
DEF1YKL054C NTF2P33331 125 aaKnown RBP5.31□□□□□ -1.56
DEF1YKL054C CHK1P38147 527 aa5.31□□□□□ -1.56
DEF1YKL054C FIG1P38224 298 aa5.31□□□□□ -1.56
DEF1YKL054C YBR096WP38256 230 aa5.31□□□□□ -1.56
DEF1YKL054C IRC7P43623 340 aa5.31□□□□□ -1.56
Retrieved 100 of 5,963 RNA–protein pairs in 40.5 ms