RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 DUSP11O75319 330 aaKnown RBP20.25■□□□□ 0.83
CLN3-254ENST00000637050 GNA14O95837 355 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 NR3C1P04150 777 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 RPL13P26373 211 aaKnown RBP20.25■□□□□ 0.83
CLN3-254ENST00000637050 NAMPTP43490 491 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 CPT1AP50416 773 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 MARSP56192 900 aaKnown RBP20.25■□□□□ 0.83
CLN3-254ENST00000637050 PPP2R5AQ15172 486 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 HS1BP3Q53T59 392 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 IER5Q5VY09 327 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 HS2ST1Q7LGA3 356 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 GOLGA5Q8TBA6 731 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 TRAPPC12Q8WVT3 735 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 TCP11Q8WWU5 503 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 KIFC3Q9BVG8 833 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 IKZF4Q9H2S9 585 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 ADGRA3Q8IWK6 1321 aa20.25■□□□□ 0.83
CLN3-254ENST00000637050 TEX33O43247 280 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 C22orf31O95567 290 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 SCP2P22307 547 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 ABCD1P33897 745 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 CACNB2Q08289 660 aaPredicted RBP20.24■□□□□ 0.83
CLN3-254ENST00000637050 MKRN4PQ13434 485 aaPredicted RBP20.24■□□□□ 0.83
CLN3-254ENST00000637050 MAP4K3Q8IVH8 894 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 SYCP3Q8IZU3 236 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 TMEM174Q8WUU8 243 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 TRIM44Q96DX7 344 aaPredicted RBP20.24■□□□□ 0.83
CLN3-254ENST00000637050 AGPAT3Q9NRZ7 376 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 IMPACTQ9P2X3 320 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 TBX20Q9UMR3 447 aa20.24■□□□□ 0.83
CLN3-254ENST00000637050 DENND3A2RUS2 1198 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 F2P00734 622 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 PBX1P40424 430 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 MTIF2P46199 727 aaKnown RBP20.23■□□□□ 0.83
CLN3-254ENST00000637050 SNRPFP62306 86 aaKnown RBP20.23■□□□□ 0.83
CLN3-254ENST00000637050 TRIM32Q13049 653 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 DRP2Q13474 957 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 BRDTQ58F21 947 aaPredicted RBP20.23■□□□□ 0.83
CLN3-254ENST00000637050 TMC6Q7Z403 805 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 ERO1AQ96HE7 468 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 DMAC2Q9NW81 257 aa20.23■□□□□ 0.83
CLN3-254ENST00000637050 CGNQ9P2M7 1197 aaKnown RBP20.23■□□□□ 0.83
CLN3-254ENST00000637050 LGALS16A8MUM7 142 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 CLIC2O15247 247 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 SEPT4O43236 478 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 FKTNO75072 461 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 IRX5P78411 483 aaPredicted RBP20.22■□□□□ 0.83
CLN3-254ENST00000637050 MIIPQ5JXC2 388 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 SLC9A9Q8IVB4 645 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 PRPF31Q8WWY3 499 aaKnown RBP20.22■□□□□ 0.83
CLN3-254ENST00000637050 KAT2BQ92831 832 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 SUGCTQ9HAC7 445 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 EXOC7Q9UPT5 735 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 MAGEB2O15479 319 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 TPM2P07951 284 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 ELNP15502 786 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 CAPSQ13938 189 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 MYBPC2Q14324 1141 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 MXD4Q14582 209 aaPredicted RBP20.22■□□□□ 0.83
CLN3-254ENST00000637050 CCDC186Q7Z3E2 898 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 C12orf56Q8IXR9 622 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 LRRC71Q8N4P6 559 aa20.22■□□□□ 0.83
CLN3-254ENST00000637050 PSPC1Q8WXF1 523 aaKnown RBP20.22■□□□□ 0.83
CLN3-254ENST00000637050 NOC4LQ9BVI4 516 aaKnown RBP20.22■□□□□ 0.83
CLN3-254ENST00000637050 SLC16A3O15427 465 aaKnown RBP20.21■□□□□ 0.83
CLN3-254ENST00000637050 ADCY3O60266 1144 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 KLRC1P26715 233 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 GJA9P57773 515 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 NKX3-2P78367 333 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 FSCN1Q16658 493 aaKnown RBP20.21■□□□□ 0.83
CLN3-254ENST00000637050 MAN2A1Q16706 1144 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 CCDC40Q4G0X9 1142 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 SPECC1LQ69YQ0 1117 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 EFCAB12Q6NXP0 572 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 TAS1R3Q7RTX0 852 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 LINC01465Q8N7H1 131 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 RETREG2Q8NC44 543 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 DEPTORQ8TB45 409 aa20.21■□□□□ 0.83
CLN3-254ENST00000637050 ZNF296Q8WUU4 475 aaPredicted RBP20.21■□□□□ 0.83
CLN3-254ENST00000637050 UPF3AQ9H1J1 476 aaKnown RBP20.21■□□□□ 0.83
CLN3-254ENST00000637050 LRRIQ4A6NIV6 560 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 AKAP3O75969 853 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 IGBP1P78318 339 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 BEX3Q00994 111 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 LAMTOR4Q0VGL1 99 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 PPFIA1Q13136 1202 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 ARHGEF6Q15052 776 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 GRIK4Q16099 956 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 PTPN21Q16825 1174 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 FRMD5Q7Z6J6 570 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 TRIM59Q8IWR1 403 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 PXYLP1Q8TE99 480 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 SUCLA2Q9P2R7 463 aaPredicted RBP20.2■□□□□ 0.82
CLN3-254ENST00000637050 SIP14410 1827 aa20.2■□□□□ 0.82
CLN3-254ENST00000637050 HAS3O00219 553 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 HMGCRP04035 888 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 PRKAR2AP13861 404 aaKnown RBP20.19■□□□□ 0.82
CLN3-254ENST00000637050 CNGA1P29973 690 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 DNM2P50570 870 aa20.19■□□□□ 0.82
CLN3-254ENST00000637050 UBXN1Q04323 297 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 109 ms