RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 TBKBP1A7MCY6 615 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 ST18O60284 1047 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 OR52Z1P0C646 297 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 POLGP54098 1239 aaPredicted RBP13.57□□□□□ -0.24
LIG1-217ENST00000599165 LAMTOR4Q0VGL1 99 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 ORC2Q13416 577 aaPredicted RBP13.57□□□□□ -0.24
LIG1-217ENST00000599165 SKIV2LQ15477 1246 aaKnown RBP13.57□□□□□ -0.24
LIG1-217ENST00000599165 IL17AQ16552 155 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 ECM1Q16610 540 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 XKR9Q5GH70 373 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 TCEAL5Q5H9L2 206 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 FERMT3Q86UX7 667 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 KLHL23Q8NBE8 558 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 SPPL3Q8TCT6 385 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 NEK9Q8TD19 979 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 ASAP3Q8TDY4 903 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 PIGOQ8TEQ8 1089 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 SLC7A3Q8WY07 619 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 P2RX5Q93086 422 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 NECAB3Q96P71 396 aaPredicted RBP13.57□□□□□ -0.24
LIG1-217ENST00000599165 C11orf84Q9BUA3 381 aaPredicted RBP13.57□□□□□ -0.24
LIG1-217ENST00000599165 TRAIPQ9BWF2 469 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 PLVAPQ9BX97 442 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 LRFN2Q9ULH4 789 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 RWDD3Q9Y3V2 267 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 PCDHB6Q9Y5E3 794 aa13.57□□□□□ -0.24
LIG1-217ENST00000599165 MEIS3P2A8K0S8 358 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 HOXA11P31270 313 aaPredicted RBP13.56□□□□□ -0.24
LIG1-217ENST00000599165 IRS1P35568 1242 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 TECP42680 631 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 TRAPPC10P48553 1259 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 DNM2P50570 870 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 PSPC1Q8WXF1 523 aaKnown RBP13.56□□□□□ -0.24
LIG1-217ENST00000599165 HLA-CQ95604 372 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 SCLT1Q96NL6 688 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 JPH2Q9BR39 696 aaPredicted RBP13.56□□□□□ -0.24
LIG1-217ENST00000599165 ATP6V0A4Q9HBG4 840 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 ANKEF1Q9NU02 776 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 TYW1Q9NV66 732 aaKnown RBP13.56□□□□□ -0.24
LIG1-217ENST00000599165 COG5Q9UP83 839 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 PCDHGC5Q9Y5F6 944 aa13.56□□□□□ -0.24
LIG1-217ENST00000599165 GJB2P29033 226 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 GTF2F1P35269 517 aaKnown RBP eCLIP13.55□□□□□ -0.24
LIG1-217ENST00000599165 ARL2P36404 184 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 PHKA2P46019 1235 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 CDC42EP1Q00587 391 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 CAPSQ13938 189 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 PTPROQ16827 1216 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 TIGD5Q53EQ6 642 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 UBXN11Q5T124 520 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 POTEGQ6S5H5 508 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 OTUD6AQ7L8S5 288 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 ADAMTS19Q8TE59 1207 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 MTRQ99707 1265 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 POLR3CQ9BUI4 534 aaPredicted RBP13.55□□□□□ -0.24
LIG1-217ENST00000599165 BACH2Q9BYV9 841 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 TMEM117Q9H0C3 514 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 LMAN2LQ9H0V9 348 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 NSUN3Q9H649 340 aaKnown RBP13.55□□□□□ -0.24
LIG1-217ENST00000599165 UBE2ZQ9H832 354 aaPredicted RBP13.55□□□□□ -0.24
LIG1-217ENST00000599165 TUFT1Q9NNX1 390 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 CHST12Q9NRB3 414 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 AGPAT5Q9NUQ2 364 aa13.55□□□□□ -0.24
LIG1-217ENST00000599165 B4GALT3O60512 393 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 SRGAP2CP0DJJ0 459 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 ZSCAN20P17040 1043 aaPredicted RBP13.54□□□□□ -0.24
LIG1-217ENST00000599165 SFPQP23246 707 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIG1-217ENST00000599165 GLRA2P23416 452 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 RPA1P27694 616 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 LTBRP36941 435 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 FXR2P51116 673 aaKnown RBP eCLIP13.54□□□□□ -0.24
LIG1-217ENST00000599165 HYAL1Q12794 435 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 AMHR2Q16671 573 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 CTC1Q2NKJ3 1217 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 ADGRD2Q7Z7M1 963 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 IFNLR1Q8IU57 520 aaPredicted RBP13.54□□□□□ -0.24
LIG1-217ENST00000599165 COLGALT1Q8NBJ5 622 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 RNF149Q8NC42 400 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 LPPQ93052 612 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 GPRC5CQ9NQ84 441 aa13.54□□□□□ -0.24
LIG1-217ENST00000599165 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.54□□□□□ -0.24
LIG1-217ENST00000599165 PIN4Q9Y237 131 aaKnown RBP13.54□□□□□ -0.24
LIG1-217ENST00000599165 PP2D1A8MPX8 630 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 GAS2O43903 313 aaKnown RBP13.53□□□□□ -0.24
LIG1-217ENST00000599165 ZNF623O75123 536 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 DGAT1O75907 488 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 CSPG5O95196 566 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 EOMESO95936 686 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 XRCC6P12956 609 aaKnown RBP eCLIP13.53□□□□□ -0.24
LIG1-217ENST00000599165 PBX3P40426 434 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 PTENP60484 403 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 DLX2Q07687 328 aaPredicted RBP13.53□□□□□ -0.24
LIG1-217ENST00000599165 PTGDRQ13258 359 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 CUL4AQ13619 759 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 NAALADL2Q58DX5 795 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 CATSPER4Q7RTX7 472 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 SRGAP1Q7Z6B7 1085 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 EXOC8Q8IYI6 725 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 IGSF22Q8N9C0 903 aa13.53□□□□□ -0.24
LIG1-217ENST00000599165 IL27Q8NEV9 243 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms