RNA–Protein interactions for RNA: ENST00000584897.5

SMCHD1-211, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 4,143 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-211ENST00000584897 AP5S1Q9NUS5 200 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 C19orf73Q9NVV2 129 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 ERVK13-1Q9NX77 482 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 GOLGA6AQ9NYA3 693 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 C4AP0C0L4 1744 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 CRB1P82279 1406 aa2.38□□□□□ -2.03
SMCHD1-211ENST00000584897 LAMTOR5O43504 91 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 SH3BP5O60239 455 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 GJB6O95452 261 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 TP53P04637 393 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 MCM7P33993 719 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 SELENOPP49908 381 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CNGB1Q14028 1251 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 TXNRD1Q16881 649 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 RRP12Q5JTH9 1297 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 ACBD5Q5T8D3 534 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 NELFAQ9H3P2 528 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 SMOC1Q9H4F8 434 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 NDOR1Q9UHB4 597 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 C4BP0C0L5 1744 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 TTC21BQ7Z4L5 1316 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 ADCY3O60266 1144 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CAND2O75155 1236 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 PEX11BO96011 259 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 HSP90AB1P08238 724 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 RPS19P39019 145 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 MASP1P48740 699 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 HMGA2P52926 109 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 STRN3Q13033 797 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 HSP90AB4PQ58FF6 505 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CD300LDQ6UXZ3 194 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CXXC5Q7LFL8 322 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 LSRQ86X29 649 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 C16orf71Q8IYS4 520 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CALML6Q8TD86 181 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 NELL1Q92832 810 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 PCDHA5Q9Y5H7 936 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 PNPLA7Q6ZV29 1317 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 TRAV20A0A0B4J274 112 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 MYOCOSA0A1B0GUC4 107 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 FAM47E-STBD1D6RA91 191 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 RHOBTB3O94955 611 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 MAP4K4O95819 1239 aaPredicted RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 PDGFRBP09619 1106 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 IFIT2P09913 472 aaKnown RBP2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 GUCY2FP51841 1108 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 CLCQ05315 142 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 C2orf27AQ580R0 203 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 ARHGEF39Q8N4T4 335 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 SLC12A9Q9BXP2 914 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 BABAM1Q9NWV8 329 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 NCAPD2Q15021 1401 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 KIF20BQ96Q89 1820 aa2.37□□□□□ -2.03
SMCHD1-211ENST00000584897 TMEM191CA6NGB0 347 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 B2RBV5 119 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 AQP7O14520 342 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 MUSKO15146 869 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 RASGRP1O95267 797 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 FUCA1P04066 466 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 MEOX1P50221 254 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF200P98182 395 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ABHD18Q0P651 414 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 CLUL1Q15846 466 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 WDR78Q5VTH9 848 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 IQSEC1Q6DN90 963 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 TRMT10BQ6PF06 316 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 CRTC3Q6UUV7 619 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 C11orf74Q86VG3 221 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ZBTB8AQ96BR9 441 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 SPATA9Q9BWV2 254 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 TOMM22Q9NS69 142 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF652Q9Y2D9 606 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ZKSCAN5Q9Y2L8 839 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 SPEF1Q9Y4P9 236 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 COMMD10Q9Y6G5 202 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 CPSF1Q10570 1443 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 FZD7O75084 574 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 PARNO95453 639 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 SNRPB2P08579 225 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 CNR2P34972 360 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 SCNN1BP51168 640 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 LBX1P52954 281 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 PPP2CBP62714 309 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 PPP2CAP67775 309 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 GJC2Q5T442 439 aaPredicted RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 PASD1Q8IV76 773 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ANKRD35Q8N283 1001 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 KLHL6Q8WZ60 621 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 RCAN3Q9UKA8 241 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ATP8A1Q9Y2Q0 1164 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 RIPOR2Q9Y4F9 1068 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 KDM3BQ7LBC6 1761 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 WDR33Q9C0J8 1336 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 EYA4O95677 639 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 MYL1P05976 194 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ZNF445P59923 1031 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 CALD1Q05682 793 aaKnown RBP2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 ERCC6LQ2NKX8 1250 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 LONRF3Q496Y0 759 aa2.36□□□□□ -2.03
SMCHD1-211ENST00000584897 SLFN13Q68D06 897 aa2.36□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms