RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 SYT10Q6XYQ8 523 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 IFIH1Q9BYX4 1025 aaKnown RBP10.01□□□□□ -0.81
VPS39-205ENST00000562258 URB1O60287 2271 aaKnown RBP10.01□□□□□ -0.81
VPS39-205ENST00000562258 RRN3P2A6NIE6 340 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 CA12O43570 354 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 CPB1P15086 417 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 NSFP46459 744 aaKnown RBP10.01□□□□□ -0.81
VPS39-205ENST00000562258 ZNF699Q32M78 642 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 CYP26C1Q6V0L0 522 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 OTUD6BQ8N6M0 293 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 EHBP1Q8NDI1 1231 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 NRBP1Q9UHY1 535 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 SNX9Q9Y5X1 595 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 SLC15A5A6NIM6 579 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 BUB1O43683 1085 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 TLR2O60603 784 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 STAM2O75886 525 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 ITGB5P18084 799 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 CYP11B2P19099 503 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 GPC3P51654 580 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 SNX16P57768 344 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PPP2R5DQ14738 602 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 RINT1Q6NUQ1 792 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PASD1Q8IV76 773 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 CCDC155Q8N6L0 562 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 BEST2Q8NFU1 509 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 PPM1EQ8WY54 764 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 AGAP1Q9UPQ3 857 aa10.01□□□□□ -0.81
VPS39-205ENST00000562258 LRRC63Q05C16 580 aa10□□□□□ -0.81
VPS39-205ENST00000562258 KCNH2Q12809 1159 aa10□□□□□ -0.81
VPS39-205ENST00000562258 TMEM270Q6UE05 265 aa10□□□□□ -0.81
VPS39-205ENST00000562258 INTS8Q75QN2 995 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 FMNL3Q8IVF7 1028 aa10□□□□□ -0.81
VPS39-205ENST00000562258 TAB3Q8N5C8 712 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 CCDC114Q96M63 670 aa10□□□□□ -0.81
VPS39-205ENST00000562258 PIDD1Q9HB75 910 aa10□□□□□ -0.81
VPS39-205ENST00000562258 VTA1Q9NP79 307 aa10□□□□□ -0.81
VPS39-205ENST00000562258 STIM2Q9P246 746 aa10□□□□□ -0.81
VPS39-205ENST00000562258 RBPJLQ9UBG7 517 aa10□□□□□ -0.81
VPS39-205ENST00000562258 KIF2AO00139 706 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 TADA2AO75478 443 aa10□□□□□ -0.81
VPS39-205ENST00000562258 ALCAMQ13740 583 aa10□□□□□ -0.81
VPS39-205ENST00000562258 HSDL1Q3SXM5 330 aa10□□□□□ -0.81
VPS39-205ENST00000562258 ADAT2Q7Z6V5 191 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 IFNL1Q8IU54 200 aa10□□□□□ -0.81
VPS39-205ENST00000562258 ZNF784Q8NCA9 323 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 ENOX1Q8TC92 643 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 SELENOOQ9BVL4 669 aa10□□□□□ -0.81
VPS39-205ENST00000562258 TYW1Q9NV66 732 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 SEL1LQ9UBV2 794 aa10□□□□□ -0.81
VPS39-205ENST00000562258 RWDD2AQ9UIY3 292 aa10□□□□□ -0.81
VPS39-205ENST00000562258 MAGED2Q9UNF1 606 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 GOLGA6L10A0A0M3HER8 536 aa10□□□□□ -0.81
VPS39-205ENST00000562258 NPTXRO95502 500 aa10□□□□□ -0.81
VPS39-205ENST00000562258 EVCP57679 992 aa10□□□□□ -0.81
VPS39-205ENST00000562258 RBM10P98175 930 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 TRIM14Q14142 442 aa10□□□□□ -0.81
VPS39-205ENST00000562258 KRT31Q15323 416 aa10□□□□□ -0.81
VPS39-205ENST00000562258 KIAA1755Q5JYT7 1200 aa10□□□□□ -0.81
VPS39-205ENST00000562258 ATF7IP2Q5U623 682 aa10□□□□□ -0.81
VPS39-205ENST00000562258 SAPCD2Q86UD0 394 aa10□□□□□ -0.81
VPS39-205ENST00000562258 BNIP3LO60238 219 aa10□□□□□ -0.81
VPS39-205ENST00000562258 PDGFRBP09619 1106 aa10□□□□□ -0.81
VPS39-205ENST00000562258 EEF1GP26641 437 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 VAMP7P51809 220 aa10□□□□□ -0.81
VPS39-205ENST00000562258 CYP27A1Q02318 531 aa10□□□□□ -0.81
VPS39-205ENST00000562258 PLCB4Q15147 1175 aa10□□□□□ -0.81
VPS39-205ENST00000562258 GRIK4Q16099 956 aa10□□□□□ -0.81
VPS39-205ENST00000562258 CCL14Q16627 93 aa10□□□□□ -0.81
VPS39-205ENST00000562258 IQSEC1Q6DN90 963 aa10□□□□□ -0.81
VPS39-205ENST00000562258 OR6B2Q6IFH4 312 aa10□□□□□ -0.81
VPS39-205ENST00000562258 ANKRD23Q86SG2 305 aa10□□□□□ -0.81
VPS39-205ENST00000562258 TMTC1Q8IUR5 882 aa10□□□□□ -0.81
VPS39-205ENST00000562258 CCDC60Q8IWA6 550 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 HASPINQ8TF76 798 aa10□□□□□ -0.81
VPS39-205ENST00000562258 BBXQ8WY36 941 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 CCDC97Q96F63 343 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 MTG1Q9BT17 334 aaPredicted RBP10□□□□□ -0.81
VPS39-205ENST00000562258 TXNRD2Q9NNW7 524 aa10□□□□□ -0.81
VPS39-205ENST00000562258 MAP3K20Q9NYL2 800 aaKnown RBP10□□□□□ -0.81
VPS39-205ENST00000562258 ADAMTS1Q9UHI8 967 aa10□□□□□ -0.81
VPS39-205ENST00000562258 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10□□□□□ -0.81
VPS39-205ENST00000562258 C10orf71Q711Q0 1435 aa10□□□□□ -0.81
VPS39-205ENST00000562258 GPR25O00155 361 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 PPP1R11O60927 126 aaPredicted RBP9.99□□□□□ -0.81
VPS39-205ENST00000562258 B3GAT3O94766 335 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 ITGA4P13612 1032 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 PLS3P13797 630 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 NOLC1Q14978 699 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS39-205ENST00000562258 DUOXA2Q1HG44 320 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 ANKRD40Q6AI12 368 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 DAGLBQ8NCG7 672 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 REPS2Q8NFH8 660 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 APBA2Q99767 749 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 SENP7Q9BQF6 1050 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 EMSYQ7Z589 1322 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 FXR2P51116 673 aaKnown RBP eCLIP9.99□□□□□ -0.81
VPS39-205ENST00000562258 GRB10Q13322 594 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 TEX2Q8IWB9 1127 aa9.99□□□□□ -0.81
VPS39-205ENST00000562258 GUF1Q8N442 669 aaKnown RBP9.99□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms