RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 PABPC4Q13310 644 aaKnown RBP eCLIP8.01□□□□□ -1.13
RTF1-204ENST00000558117 FAM50AQ14320 339 aaKnown RBP8.01□□□□□ -1.13
RTF1-204ENST00000558117 RGL3Q3MIN7 710 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 ABHD17CQ6PCB6 329 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 FAM26EQ8N5C1 309 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 FBXW5Q969U6 566 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 SYT3Q9BQG1 590 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 TAF1DQ9H5J8 278 aaPredicted RBP8.01□□□□□ -1.13
RTF1-204ENST00000558117 VCANP13611 3396 aa8.01□□□□□ -1.13
RTF1-204ENST00000558117 C4BP0C0L5 1744 aa8□□□□□ -1.13
RTF1-204ENST00000558117 UBR3Q6ZT12 1888 aa8□□□□□ -1.13
RTF1-204ENST00000558117 CEP290O15078 2479 aa8□□□□□ -1.13
RTF1-204ENST00000558117 CDC45O75419 566 aa8□□□□□ -1.13
RTF1-204ENST00000558117 DDNO94850 711 aaPredicted RBP8□□□□□ -1.13
RTF1-204ENST00000558117 SASH1O94885 1247 aa8□□□□□ -1.13
RTF1-204ENST00000558117 CHRNA5P30532 468 aa8□□□□□ -1.13
RTF1-204ENST00000558117 DNM2P50570 870 aa8□□□□□ -1.13
RTF1-204ENST00000558117 FAM47CQ5HY64 1035 aa8□□□□□ -1.13
RTF1-204ENST00000558117 TTLL7Q6ZT98 887 aa8□□□□□ -1.13
RTF1-204ENST00000558117 C16orf86Q6ZW13 317 aa8□□□□□ -1.13
RTF1-204ENST00000558117 C16orf59Q7L2K0 433 aa8□□□□□ -1.13
RTF1-204ENST00000558117 SAPCD2Q86UD0 394 aa8□□□□□ -1.13
RTF1-204ENST00000558117 UHMK1Q8TAS1 419 aaKnown RBP8□□□□□ -1.13
RTF1-204ENST00000558117 SH3RF2Q8TEC5 729 aa8□□□□□ -1.13
RTF1-204ENST00000558117 CLEC4DQ8WXI8 215 aa8□□□□□ -1.13
RTF1-204ENST00000558117 NOX5Q96PH1 765 aa8□□□□□ -1.13
RTF1-204ENST00000558117 ZCCHC4Q9H5U6 513 aa8□□□□□ -1.13
RTF1-204ENST00000558117 CATSPERZQ9NTU4 200 aa8□□□□□ -1.13
RTF1-204ENST00000558117 DSEQ9UL01 958 aa8□□□□□ -1.13
RTF1-204ENST00000558117 COQ6Q9Y2Z9 468 aa8□□□□□ -1.13
RTF1-204ENST00000558117 TELO2Q9Y4R8 837 aa8□□□□□ -1.13
RTF1-204ENST00000558117 RGPD5Q99666 1765 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 CCDC66A2RUB6 948 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 GSTA4O15217 222 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 DNAJC8O75937 253 aaPredicted RBP7.99□□□□□ -1.13
RTF1-204ENST00000558117 AMY2AP04746 511 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 AMY2BP19961 511 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 SMAD4Q13485 552 aaKnown RBP7.99□□□□□ -1.13
RTF1-204ENST00000558117 TCEA2Q15560 299 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 FBLN7Q53RD9 439 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 EP400NLQ6ZTU2 488 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 OSTM1Q86WC4 334 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 TIAM2Q8IVF5 1701 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 CNTROBQ8N137 903 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 GORASP1Q9BQQ3 440 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 TAF1LQ8IZX4 1826 aa7.99□□□□□ -1.13
RTF1-204ENST00000558117 PALLDQ8WX93 1383 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 FFAR3O14843 346 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 RFPL3O75679 317 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 PDE6AP16499 860 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 TMF1P82094 1093 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 GRIN1Q05586 938 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 VWA3BQ502W6 1294 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 TEPPQ6URK8 271 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 ARHGAP36Q6ZRI8 547 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 TTLL6Q8N841 843 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 KYQ8NBH2 561 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 TTLL11Q8NHH1 800 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 C11orf84Q9BUA3 381 aaPredicted RBP7.98□□□□□ -1.13
RTF1-204ENST00000558117 CD244Q9BZW8 370 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 DDX21Q9NR30 783 aaKnown RBP eCLIP7.98□□□□□ -1.13
RTF1-204ENST00000558117 NTMQ9P121 344 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 TNPO3Q9Y5L0 923 aaKnown RBP7.98□□□□□ -1.13
RTF1-204ENST00000558117 BRCA2P51587 3418 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 DOT1LQ8TEK3 1739 aa7.98□□□□□ -1.13
RTF1-204ENST00000558117 ENPP3O14638 875 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 TRIM13O60858 407 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 KRT15P19012 456 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 ITGA1P56199 1179 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 JAM2P57087 298 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 TUSC3Q13454 348 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 ZNF460Q14592 562 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 CR1LQ2VPA4 569 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 LIPIQ6XZB0 460 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.97□□□□□ -1.13
RTF1-204ENST00000558117 SYNPOQ8N3V7 929 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 CISD2Q8N5K1 135 aaKnown RBP7.97□□□□□ -1.13
RTF1-204ENST00000558117 LINC00482Q8N8I6 264 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 CDK19Q9BWU1 502 aa7.97□□□□□ -1.13
RTF1-204ENST00000558117 LUC7LQ9NQ29 371 aaKnown RBP7.97□□□□□ -1.13
RTF1-204ENST00000558117 C4AP0C0L4 1744 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 SH3D21A4FU49 640 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 KCNK3O14649 394 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 LRG1P02750 347 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 INHBBP09529 407 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 GPR19Q15760 415 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 CRY1Q16526 586 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 KCTD1Q719H9 257 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 OVCH1Q7RTY7 1134 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 CTU1Q7Z7A3 348 aaKnown RBP7.96□□□□□ -1.14
RTF1-204ENST00000558117 STK32CQ86UX6 486 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 PTRH1Q86Y79 214 aaKnown RBP7.96□□□□□ -1.14
RTF1-204ENST00000558117 IGSF22Q8N9C0 903 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 CLIC6Q96NY7 704 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 WRNIP1Q96S55 665 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 TMEM209Q96SK2 561 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 SMURF1Q9HCE7 757 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 TMA7Q9Y2S6 64 aaKnown RBP7.96□□□□□ -1.14
RTF1-204ENST00000558117 ADAMTSL1Q8N6G6 1762 aa7.96□□□□□ -1.14
RTF1-204ENST00000558117 A0A1B0GTL3 188 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms