RNA–Protein interactions for RNA: ENST00000555634.5

SHMT2-220, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 964 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-220ENST00000555634 CLCN3P51790 818 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 NCBP1Q09161 790 aaKnown RBP12.34□□□□□ -0.43
SHMT2-220ENST00000555634 PAK1Q13153 545 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 PTGISQ16647 500 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 DPCR1Q3MIW9 517 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 ANO6Q4KMQ2 910 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 ISM2Q6H9L7 571 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 APBB1IPQ7Z5R6 666 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-220ENST00000555634 ZNF410Q86VK4 478 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 LRRC71Q8N4P6 559 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 SPIRE2Q8WWL2 714 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 NLRP4Q96MN2 994 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 MCOLN1Q9GZU1 580 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 FAM49AQ9H0Q0 323 aaPredicted RBP12.34□□□□□ -0.43
SHMT2-220ENST00000555634 TMEM206Q9H813 350 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 SLC39A2Q9NP94 309 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 TBC1D7Q9P0N9 293 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 HDAC6Q9UBN7 1215 aa12.34□□□□□ -0.43
SHMT2-220ENST00000555634 IGKV6-21A0A0C4DH24 114 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 MBLAC1A4D2B0 266 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 SMTNL1A8MU46 457 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 ZBTB42B2RXF5 422 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 CALUO43852 315 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 KLRC4O43908 158 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 CAND2O75155 1236 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 ERLIN2O94905 339 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 NPTX2P47972 431 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 ZNF165P49910 485 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 LAMTOR4Q0VGL1 99 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 COBLL1Q53SF7 1204 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 CCSAPQ6IQ19 270 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 KLHL10Q6JEL2 608 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 PPP4R3CPQ6ZMV5 832 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 NME8Q8N427 588 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 GUF1Q8N442 669 aaKnown RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 RNF149Q8NC42 400 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 ANKRD20A12PQ8NF67 263 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 DHTKD1Q96HY7 919 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 ACCSQ96QU6 501 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 INO80BQ9C086 356 aaPredicted RBP12.33□□□□□ -0.44
SHMT2-220ENST00000555634 DNAJC25Q9H1X3 360 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 GPRC5CQ9NQ84 441 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 XPNPEP1Q9NQW7 623 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 CTNND2Q9UQB3 1225 aa12.33□□□□□ -0.44
SHMT2-220ENST00000555634 DENND3A2RUS2 1198 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 HNRNPDLO14979 420 aaKnown RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 SLC16A4O15374 487 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 TPM2P07951 284 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 SFPQP23246 707 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 ERCC5P28715 1186 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 ARL2P36404 184 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 NCKAP1LP55160 1127 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 IRX5P78411 483 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 MYL5Q02045 173 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 LRRC63Q05C16 580 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 MAPK7Q13164 816 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 PTK7Q13308 1070 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 PCBP1Q15365 356 aaKnown RBP eCLIP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 MAPK6Q16659 721 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 HAUS6Q7Z4H7 955 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 FAM114A1Q8IWE2 563 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 FAM200AQ8TCP9 573 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 PRPF31Q8WWY3 499 aaKnown RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 BPIFA3Q9BQP9 254 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 GCOM2Q9BZD3 368 aaPredicted RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 CRISPLD2Q9H0B8 497 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 ST6GALNAC4Q9H4F1 302 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 CGNQ9P2M7 1197 aaKnown RBP12.32□□□□□ -0.44
SHMT2-220ENST00000555634 GDAQ9Y2T3 454 aa12.32□□□□□ -0.44
SHMT2-220ENST00000555634 SFI1A8K8P3 1242 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 K7ERI5 159 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 ARVCFO00192 962 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 TREHO43280 583 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 SRGAP2CP0DJJ0 459 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 GLRA2P23416 452 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 RPL13P26373 211 aaKnown RBP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 HOXC8P31273 242 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 MATR3P43243 847 aaKnown RBP eCLIP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 LIG4P49917 911 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 SNRPFP62306 86 aaKnown RBP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 EHHADHQ08426 723 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 BFSP2Q13515 415 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 CAPSQ13938 189 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 NECAB2Q7Z6G3 386 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 SERINC5Q86VE9 423 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 SMYD4Q8IYR2 804 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 KIAA0895Q8NCT3 520 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 ASAP3Q8TDY4 903 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 NELFBQ8WX92 580 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 CEP89Q96ST8 783 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 NFKBIZQ9BYH8 718 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 C11orf49Q9H6J7 331 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 PDLIM7Q9NR12 457 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 TYW1Q9NV66 732 aaKnown RBP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 MAGEC2Q9UBF1 373 aaPredicted RBP12.31□□□□□ -0.44
SHMT2-220ENST00000555634 RWDD2AQ9UIY3 292 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 MAPK8IP1Q9UQF2 711 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 RALGAPA2Q2PPJ7 1873 aa12.31□□□□□ -0.44
SHMT2-220ENST00000555634 DCDC2CA8MYV0 355 aa12.3□□□□□ -0.44
SHMT2-220ENST00000555634 INO80B-WBP1J3KQ70 363 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms