RNA–Protein interactions for RNA: ENST00000553011.5

PTCH1-226, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 1,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-226ENST00000553011 SLC26A4O43511 780 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 PPP6R2O75170 966 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 AMHP03971 560 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 SSBP05455 408 aaKnown RBP eCLIP15.67■□□□□ 0.1
PTCH1-226ENST00000553011 MYOGP15173 224 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 PLCG1P19174 1290 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 CAPSQ13938 189 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 ATL3Q6DD88 541 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 RASSF8Q8NHQ8 419 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 FTHL17Q9BXU8 183 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 MINDY3Q9H8M7 445 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 BLOC1S4Q9NUP1 217 aa15.67■□□□□ 0.1
PTCH1-226ENST00000553011 SZT2Q5T011 3432 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 PLA2G4BP0C869 781 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 DNAJB2P25686 324 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 ANP32AP39687 249 aaKnown RBP15.66■□□□□ 0.1
PTCH1-226ENST00000553011 MXD4Q14582 209 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-226ENST00000553011 ODR4Q5SWX8 454 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 RINT1Q6NUQ1 792 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 C1orf186Q6ZWK4 172 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 KCTD17Q8N5Z5 321 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 BSNDQ8WZ55 320 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 TSPYL2Q9H2G4 693 aaPredicted RBP15.66■□□□□ 0.1
PTCH1-226ENST00000553011 CFAP45Q9UL16 551 aa15.66■□□□□ 0.1
PTCH1-226ENST00000553011 YBX2Q9Y2T7 364 aaKnown RBP15.66■□□□□ 0.1
PTCH1-226ENST00000553011 CHD9Q3L8U1 2897 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 FNDC1Q4ZHG4 1894 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 UPP2O95045 317 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 NCLP19338 710 aaKnown RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 IBSPP21815 317 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 PHKA2P46019 1235 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 SLC12A3P55017 1021 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 PTENP60484 403 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 TFDP1Q14186 410 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 DHX8Q14562 1220 aaKnown RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 DSC3Q14574 896 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 AXDND1Q5T1B0 1012 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 SYT2Q8N9I0 419 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 KCNG4Q8TDN1 519 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 TOP1MTQ969P6 601 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 ADAM2Q99965 735 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 INO80BQ9C086 356 aaPredicted RBP15.65■□□□□ 0.1
PTCH1-226ENST00000553011 NKX2-4Q9H2Z4 354 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 RCOR1Q9UKL0 485 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 NLRC5Q86WI3 1866 aa15.65■□□□□ 0.1
PTCH1-226ENST00000553011 A0A087X0B3 334 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 DENND3A2RUS2 1198 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 LRRIQ4A6NIV6 560 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 CUTAO60888 179 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 HIP1RO75146 1068 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 GJB5O95377 273 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 SFPQP23246 707 aaKnown RBP eCLIP15.64■□□□□ 0.09
PTCH1-226ENST00000553011 TXLNAP40222 546 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 ME1P48163 572 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 KRT85P78386 507 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 NUCB2P80303 420 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 RAD51AP2Q09MP3 1159 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 MAPK7Q13164 816 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 MCM6Q14566 821 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 RAB30Q15771 203 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 CATSPER4Q7RTX7 472 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 SRGAP1Q7Z6B7 1085 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 IFNLR1Q8IU57 520 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-226ENST00000553011 DAW1Q8N136 415 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 LEO1Q8WVC0 666 aaPredicted RBP15.64■□□□□ 0.09
PTCH1-226ENST00000553011 RAD54LQ92698 747 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 TIFAQ96CG3 184 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 ZBED2Q9BTP6 218 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 PANK2Q9BZ23 570 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 CCDC39Q9UFE4 941 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 MSRAQ9UJ68 235 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 PCDHA7Q9UN72 937 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 PCDHA11Q9Y5I1 949 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 ATP6V1DQ9Y5K8 247 aa15.64■□□□□ 0.09
PTCH1-226ENST00000553011 NPHP3-ACAD11A0A0J9YXS1 232 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 C9IYK1 514 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 TLL1O43897 1013 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 POU5F1BQ06416 359 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 ARSHQ5FYA8 562 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 RRAGBQ5VZM2 374 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 SHC4Q6S5L8 630 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 Q7L0L9 218 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 GPBP1Q86WP2 473 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 KIFAP3Q92845 792 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 RGS18Q9NS28 235 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 COL4A6Q14031 1691 aa15.63■□□□□ 0.09
PTCH1-226ENST00000553011 KIAA1671Q9BY89 1806 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 LCHNA4D1U4 455 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 INO80B-WBP1J3KQ70 363 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 ARHGEF15O94989 841 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 CA3P07451 260 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 ZSCAN20P17040 1043 aaPredicted RBP15.62■□□□□ 0.09
PTCH1-226ENST00000553011 GUCY2CP25092 1073 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 CACNB1Q02641 598 aaPredicted RBP15.62■□□□□ 0.09
PTCH1-226ENST00000553011 MBTD1Q05BQ5 628 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 NAALADL2Q58DX5 795 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 PDILTQ8N807 584 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 LARP4BQ92615 738 aaKnown RBP15.62■□□□□ 0.09
PTCH1-226ENST00000553011 SPATA32Q96LK8 384 aa15.62■□□□□ 0.09
PTCH1-226ENST00000553011 RAD9AQ99638 391 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms