RNA–Protein interactions for RNA: ENST00000543766.2

VPS13D-212, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 2 BASIC

Gene VPS13D, Length 3,838 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-212ENST00000543766 RNF40O75150 1001 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 SMNDC1O75940 238 aaKnown RBP eCLIP9.54□□□□□ -0.883e-14■■□□□ 12.6
VPS13D-212ENST00000543766 KRT75O95678 551 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 GNAI3P08754 354 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 SYT1P21579 422 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 LMOD1P29536 600 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 GPC3P51654 580 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 BEX3Q00994 111 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 SPARTQ8N0X7 666 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 URGCPQ8TCY9 931 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 NAT10Q9H0A0 1025 aaKnown RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 CARD9Q9H257 536 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 GTF2A1LQ9UNN4 478 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 TTC41PQ6P2S7 1318 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 AKAP12Q02952 1782 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 RANBP6O60518 1105 aaKnown RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 KCNH1O95259 989 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ENO2P09104 434 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ARL1P40616 181 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ARHGDIBP52566 201 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ADAM17P78536 824 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 CACNB2Q08289 660 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 FSCBQ5H9T9 825 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 TRIM65Q6PJ69 517 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 SCUBE1Q8IWY4 988 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 KIFC2Q96AC6 838 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF845Q96IR2 970 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 HIC2Q96JB3 615 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 GAS2L1Q99501 681 aaPredicted RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 COQ3Q9NZJ6 369 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 HERC5Q9UII4 1024 aaKnown RBP9.54□□□□□ -0.88
VPS13D-212ENST00000543766 ERVK-19Q9WJR5 959 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 DLG5Q8TDM6 1919 aa9.54□□□□□ -0.88
VPS13D-212ENST00000543766 RAB19A4D1S5 217 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SH3D21A4FU49 640 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 NVLO15381 856 aaKnown RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 TCEA3O75764 348 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CDK4P11802 303 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 GNAQP50148 359 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 RUNX1T1Q06455 604 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 DPYSQ14117 519 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SNAP47Q5SQN1 464 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF362Q5T0B9 420 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC62Q6P9F0 684 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SYCE1Q8N0S2 351 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 NRBF2Q96F24 287 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 PPP1R16BQ96T49 567 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 HERPUD2Q9BSE4 406 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 ESYT1Q9BSJ8 1104 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 FANCLQ9NW38 375 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SAGE1Q9NXZ1 904 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SENP1Q9P0U3 644 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 TMCO1Q9UM00 188 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 JAG2Q9Y219 1238 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CFL2Q9Y281 166 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 TOPAZ1Q8N9V7 1692 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 TYW5A2RUC4 315 aaKnown RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CCDC69A6NI79 296 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 B4E1Z4 1266 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CHMP2AO43633 222 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 ZPR1O75312 459 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CFBP00751 764 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 IFIT5Q13325 482 aaKnown RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 E2F2Q14209 437 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SLC45A4Q5BKX6 768 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 PRPF40BQ6NWY9 871 aaKnown RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 NUDT16L1Q9BRJ7 211 aaKnown RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 VPS16Q9H269 839 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 SEMA4AQ9H3S1 761 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 MTMR6Q9Y217 621 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 NCAM2O15394 837 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 STRNO43815 780 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 HLA-DRAP01903 254 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 RAC2P15153 192 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 GDI1P31150 447 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CPT1AP50416 773 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 NFE2L1Q14494 772 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 TTF1Q15361 905 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 MINDY4Q4G0A6 757 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 ZNF574Q6ZN55 896 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 RFPL4BQ6ZWI9 263 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 PNMA8AQ86V59 439 aaPredicted RBP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 PSD4Q8NDX1 1056 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 PJA1Q8NG27 643 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 CCHCR1Q8TD31 782 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 LZICQ8WZA0 190 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 ATP6V1G3Q96LB4 118 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 FTOQ9C0B1 505 aaKnown RBP eCLIP9.53□□□□□ -0.88
VPS13D-212ENST00000543766 LY9Q9HBG7 655 aa9.53□□□□□ -0.88
VPS13D-212ENST00000543766 RAD51BO15315 384 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 SMPD2O60906 423 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 COBLO75128 1261 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 NDUFV2P19404 249 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 IL32P24001 234 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 PHEXP78562 749 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 OTUD4Q01804 1114 aaKnown RBP9.52□□□□□ -0.88
VPS13D-212ENST00000543766 PLOD1Q02809 727 aaPredicted RBP9.52□□□□□ -0.88
VPS13D-212ENST00000543766 SNW1Q13573 536 aaKnown RBP9.52□□□□□ -0.88
VPS13D-212ENST00000543766 TRIM22Q8IYM9 498 aa9.52□□□□□ -0.88
VPS13D-212ENST00000543766 ANKRD44Q8N8A2 993 aa9.52□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms