RNA–Protein interactions for RNA: ENST00000537529.6

MKS1-204, Transcript of Meckel syndrome, type 1, humanhuman

TSL 1 (best) BASIC

Gene MKS1, Length 2,083 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1-204ENST00000537529 NCKAP1LP55160 1127 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 C2orf54Q08AI8 447 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 TMEM132BQ14DG7 1078 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 SUPT20HL1Q3ZLR7 823 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 MAP9Q49MG5 647 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 CBWD6Q4V339 395 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 CBWD3Q5JTY5 395 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 CBWD5Q5RIA9 395 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 FAM102BQ5T8I3 360 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 ALKBH5Q6P6C2 394 aaKnown RBP17.06■□□□□ 0.32
MKS1-204ENST00000537529 CDHR1Q96JP9 859 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 DNAJC12Q9UKB3 198 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 FZD1Q9UP38 647 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 MYH11P35749 1972 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 TMEM150BA6NC51 233 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 MAPK13O15264 365 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 CCDC172P0C7W6 258 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 PLA2G4FQ68DD2 849 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 OTUD6AQ7L8S5 288 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 GPC2Q8N158 579 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 UBE2Q2Q8WVN8 375 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 ATP6V0A1Q93050 837 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 HVCN1Q96D96 273 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 UBXN6Q9BZV1 441 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 RNF14Q9UBS8 474 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 APEX2Q9UBZ4 518 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 NENFQ9UMX5 172 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 L1RE1Q9UN81 338 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 EXOC7Q9UPT5 735 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 SSC5DA1L4H1 1573 aa17.06■□□□□ 0.32
MKS1-204ENST00000537529 RLFQ13129 1914 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 STAM2O75886 525 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 PEX3P56589 373 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 CETN1Q12798 172 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 MSL3Q8N5Y2 521 aaKnown RBP17.05■□□□□ 0.32
MKS1-204ENST00000537529 XXYLT1Q8NBI6 393 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 FBXO41Q8TF61 875 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 RUBCNQ92622 972 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 HOXC10Q9NYD6 342 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 CYP39A1Q9NYL5 469 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 INTUQ9ULD6 942 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 NFASCO94856 1347 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 SLC16A4O15374 487 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 P4HA2O15460 535 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 EVI5O60447 810 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 EIF3JO75822 258 aaKnown RBP17.05■□□□□ 0.32
MKS1-204ENST00000537529 VAMP7P51809 220 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 SMTNP53814 917 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 GPS2Q13227 327 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 SMC1AQ14683 1233 aaKnown RBP17.05■□□□□ 0.32
MKS1-204ENST00000537529 DRAP1Q14919 205 aaPredicted RBP17.05■□□□□ 0.32
MKS1-204ENST00000537529 RDH13Q8NBN7 331 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 SPATA4Q8NEY3 305 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 PSMB7Q99436 277 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 SH2D3AQ9BRG2 576 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 PCIF1Q9H4Z3 704 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 GPRC5CQ9NQ84 441 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 ST7Q9NRC1 585 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 HSPBP1Q9NZL4 362 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 AFG3L2Q9Y4W6 797 aa17.05■□□□□ 0.32
MKS1-204ENST00000537529 FTCDO95954 541 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 PSAPP07602 524 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 KCNA2P16389 499 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 LMNB1P20700 586 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 CXCR5P32302 372 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 NPEPPSP55786 919 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 DMP1Q13316 513 aaPredicted RBP17.04■□□□□ 0.32
MKS1-204ENST00000537529 GNPTABQ3T906 1256 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 CFAP221Q4G0U5 840 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 MEI1Q5TIA1 1274 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 NLGN2Q8NFZ4 835 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 KIFAP3Q92845 792 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 VTI1AQ96AJ9 217 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 CBWD1Q9BRT8 395 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 GABBR1Q9UBS5 961 aa17.04■□□□□ 0.32
MKS1-204ENST00000537529 COL11A1P12107 1806 aaPredicted RBP17.04■□□□□ 0.32
MKS1-204ENST00000537529 GRID2IPA4D2P6 1211 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 SPDYE16A6NNV3 312 aaPredicted RBP17.03■□□□□ 0.32
MKS1-204ENST00000537529 H2AFZP0C0S5 128 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 DMTNQ08495 405 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 H2AFVQ71UI9 128 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 ANO5Q75V66 913 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.03■□□□□ 0.32
MKS1-204ENST00000537529 JPH1Q9HDC5 661 aaPredicted RBP17.03■□□□□ 0.32
MKS1-204ENST00000537529 A1CFQ9NQ94 594 aaKnown RBP17.03■□□□□ 0.32
MKS1-204ENST00000537529 EMSYQ7Z589 1322 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 CCDC169A6NNP5 214 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 TISP43B9A030 160 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 DDX3XO00571 662 aaKnown RBP eCLIP17.03■□□□□ 0.326e-6■□□□□ 8.9
MKS1-204ENST00000537529 FAM193AP78312 1265 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 SH3D19Q5HYK7 790 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 TRMT1LQ7Z2T5 733 aaKnown RBP17.03■□□□□ 0.32
MKS1-204ENST00000537529 U2AF1L4Q8WU68 220 aaKnown RBP17.03■□□□□ 0.32
MKS1-204ENST00000537529 CEP170P1Q96L14 293 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 ACBD3Q9H3P7 528 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 C17orf75Q9HAS0 396 aa17.03■□□□□ 0.32
MKS1-204ENST00000537529 A0A0A6YYK5 440 aaPredicted RBP17.02■□□□□ 0.32
MKS1-204ENST00000537529 OAS2P29728 719 aaKnown RBP17.02■□□□□ 0.32
MKS1-204ENST00000537529 SPIRE2Q8WWL2 714 aa17.02■□□□□ 0.32
MKS1-204ENST00000537529 TAF4BQ92750 862 aa17.02■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 51.6 ms