RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 SLC24A5Q71RS6 500 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 FBXO18Q8NFZ0 1043 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 VN1R2Q8NFZ6 395 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 HELQQ8TDG4 1101 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 BCL7CQ8WUZ0 217 aaPredicted RBP10.79□□□□□ -0.68
SSBP3-215ENST00000533946 HLA-CQ95604 372 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 TMX3Q96JJ7 454 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 MAP7D2Q96T17 732 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 RNF39Q9H2S5 420 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 UBE2ZQ9H832 354 aaPredicted RBP10.79□□□□□ -0.68
SSBP3-215ENST00000533946 CEP131Q9UPN4 1083 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 PCDHB7Q9Y5E2 793 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 PCDHB6Q9Y5E3 794 aa10.79□□□□□ -0.68
SSBP3-215ENST00000533946 F8W810 466 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 GPR182O15218 404 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 B4GALT5O43286 388 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 MARCH6O60337 910 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 NEMFO60524 1076 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 TBX10O75333 385 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 GCFC2P16383 781 aaKnown RBP10.78□□□□□ -0.68
SSBP3-215ENST00000533946 XBP1P17861 261 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 LAMTOR4Q0VGL1 99 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 EMC2Q15006 297 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 POTEGQ6S5H5 508 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 EP400NLQ6ZTU2 488 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 RBM23Q86U06 439 aaKnown RBP10.78□□□□□ -0.68
SSBP3-215ENST00000533946 C4orf19Q8IY42 314 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 CMTR2Q8IYT2 770 aaKnown RBP10.78□□□□□ -0.68
SSBP3-215ENST00000533946 FAM177A1Q8N128 213 aaPredicted RBP10.78□□□□□ -0.68
SSBP3-215ENST00000533946 POF1BQ8WVV4 589 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 BSNDQ8WZ55 320 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 WASF1Q92558 559 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 CPB2Q96IY4 423 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 SCLT1Q96NL6 688 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 UHRF1Q96T88 793 aaPredicted RBP10.78□□□□□ -0.68
SSBP3-215ENST00000533946 FTHL17Q9BXU8 183 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 LRFN2Q9ULH4 789 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 PCDHA12Q9UN75 941 aa10.78□□□□□ -0.68
SSBP3-215ENST00000533946 HIDE1A8MVS5 230 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 TBX3O15119 743 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 GLP2RO95838 553 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 IGFBP6P24592 240 aaPredicted RBP10.77□□□□□ -0.69
SSBP3-215ENST00000533946 COL19A1Q14993 1142 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 KANK3Q6NY19 840 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 CATSPER3Q86XQ3 398 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 COLGALT1Q8NBJ5 622 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 LRRC15Q8TF66 581 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 AUTS2Q8WXX7 1259 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 TNPO1Q92973 898 aaKnown RBP10.77□□□□□ -0.69
SSBP3-215ENST00000533946 TBC1D32Q96NH3 1257 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 VN1R3Q9BXE9 311 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 EIF2AQ9BY44 585 aaKnown RBP10.77□□□□□ -0.69
SSBP3-215ENST00000533946 EPHX3Q9H6B9 360 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 ATP6V0A4Q9HBG4 840 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 TMEM161AQ9NX61 479 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 MIOSQ9NXC5 875 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 LMCD1Q9NZU5 365 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 CACNG4Q9UBN1 327 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 HES2Q9Y543 173 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 COL4A3BPQ9Y5P4 624 aa10.77□□□□□ -0.69
SSBP3-215ENST00000533946 A0A0U1RQF3 1178 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 GRXCR2A6NFK2 248 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 GLRA2P23416 452 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 TMOD1P28289 359 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 ARL2P36404 184 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 PHKA2P46019 1235 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 RARRES1P49788 294 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 POLGP54098 1239 aaPredicted RBP10.76□□□□□ -0.69
SSBP3-215ENST00000533946 CAPSQ13938 189 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 AMHR2Q16671 573 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 CTC1Q2NKJ3 1217 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 TTC38Q5R3I4 469 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 AGMOQ6ZNB7 445 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 KCNK18Q7Z418 384 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 FERMT3Q86UX7 667 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 ZNF280BQ86YH2 543 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 TMEM130Q8N3G9 435 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 NEK9Q8TD19 979 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 LLPHQ9BRT6 129 aaKnown RBP10.76□□□□□ -0.69
SSBP3-215ENST00000533946 GCOM2Q9BZD3 368 aaPredicted RBP10.76□□□□□ -0.69
SSBP3-215ENST00000533946 NSUN3Q9H649 340 aaKnown RBP10.76□□□□□ -0.69
SSBP3-215ENST00000533946 ZSWIM4Q9H7M6 989 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 CLDND1Q9NY35 253 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 CLEC1BQ9P126 229 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 DNAJB4Q9UDY4 337 aa10.76□□□□□ -0.69
SSBP3-215ENST00000533946 PIN4Q9Y237 131 aaKnown RBP10.76□□□□□ -0.69
SSBP3-215ENST00000533946 TNFRSF10AO00220 468 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 USO1O60763 962 aaKnown RBP10.75□□□□□ -0.69
SSBP3-215ENST00000533946 FGF18O76093 207 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 DDHD2O94830 711 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 STAG3L1P0CL83 205 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 U2AF2P26368 475 aaKnown RBP eCLIP10.75□□□□□ -0.69
SSBP3-215ENST00000533946 GJB2P29033 226 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 NRIP1P48552 1158 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 TRIM29Q14134 588 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 SPOUT1Q5T280 376 aaKnown RBP10.75□□□□□ -0.69
SSBP3-215ENST00000533946 CATSPER4Q7RTX7 472 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 NOSTRINQ8IVI9 506 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 SLFN12Q8IYM2 578 aa10.75□□□□□ -0.69
SSBP3-215ENST00000533946 RNF149Q8NC42 400 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms