RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 EP300Q09472 2414 aaPredicted RBP17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 PROB1E7EW31 1015 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 FGFR4P22455 802 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 AVPR2P30518 371 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 AKAP17AQ02040 695 aaKnown RBP17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 KRT17Q04695 432 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 CLLU1OSQ5K130 101 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 SYCE2Q6PIF2 218 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 NLRP7Q8WX94 980 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 S1PR5Q9H228 398 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 SMOC2Q9H3U7 446 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 PDRG1Q9NUG6 133 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 SPG21Q9NZD8 308 aa17.73■□□□□ 0.43
CHMP4A-207ENST00000533523 ZNF862O60290 1169 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 EIF4BP23588 611 aaKnown RBP17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 GNA11P29992 359 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 KCNC3Q14003 757 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 SMC1AQ14683 1233 aaKnown RBP17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 UGCGQ16739 394 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 TPRNQ4KMQ1 711 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 TMEM184AQ6ZMB5 413 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 LINC01465Q8N7H1 131 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 HELQQ8TDG4 1101 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 CASP10Q92851 521 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 PHKBQ93100 1093 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 LENG9Q96B70 501 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 DISC1Q9NRI5 854 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 CFAP47Q6ZTR5 3102 aa17.72■□□□□ 0.43
CHMP4A-207ENST00000533523 C2orf16Q68DN1 1984 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 PRR23AA6NEV1 266 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 GAS7O60861 476 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 DARSP14868 501 aaKnown RBP17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 HOXB8P17481 243 aaPredicted RBP17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 PDIA3P30101 505 aaKnown RBP17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 GPC3P51654 580 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 TBC1D8BQ0IIM8 1120 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 TOB2Q14106 344 aaPredicted RBP17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 CCDC148Q8NFR7 591 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 BICD2Q8TD16 824 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 ZNF274Q96GC6 653 aaPredicted RBP17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 NR2E1Q9Y466 385 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 CEP250Q9BV73 2442 aa17.71■□□□□ 0.43
CHMP4A-207ENST00000533523 CACNA1BQ00975 2339 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 PRPF3O43395 683 aaKnown RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 CIITAP33076 1130 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 ANP32AP39687 249 aaKnown RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 CPLX2Q6PUV4 134 aaKnown RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 SLC39A11Q8N1S5 342 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 ZNF710Q8N1W2 664 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 TEKT3Q9BXF9 490 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 RNF26Q9BY78 433 aaPredicted RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 MRPL9Q9BYD2 267 aaKnown RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 POMKQ9H5K3 350 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 NRBP2Q9NSY0 501 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 SEPT9Q9UHD8 586 aaPredicted RBP17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 HCFC2Q9Y5Z7 792 aa17.7■□□□□ 0.42
CHMP4A-207ENST00000533523 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 C2orf71A6NGG8 1288 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 NT5C1B-RDH14C9J2C7 533 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 CPLX1O14810 134 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 MSH4O15457 936 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 ZC3H11AO75152 810 aaKnown RBP eCLIP17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 CSDE1O75534 798 aaKnown RBP17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 IFNAR1P17181 557 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 NEK4P51957 841 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 JAK3P52333 1124 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 CCT2P78371 535 aaKnown RBP17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 ANKRD1Q15327 319 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 LRCH2Q5VUJ6 765 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 CES5AQ6NT32 575 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 TRIM22Q8IYM9 498 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 TMEM105Q8N8V8 129 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 KREMEN2Q8NCW0 462 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 ATOH1Q92858 354 aaPredicted RBP17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 TMEM169Q96HH4 297 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 SLC26A6Q9BXS9 759 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 UNC45AQ9H3U1 944 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 DACT1Q9NYF0 836 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 VPS54Q9P1Q0 977 aa17.69■□□□□ 0.42
CHMP4A-207ENST00000533523 ARID2Q68CP9 1835 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 A0A0U1RQF3 1178 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 C2CD4DB7Z1M9 353 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 SFNP31947 248 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 ALDH7A1P49419 539 aaKnown RBP17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 BCAR1P56945 870 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 MTMR3Q13615 1198 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 BMS1Q14692 1282 aaKnown RBP17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 MTERF2Q49AM1 385 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 RARS2Q5T160 578 aaKnown RBP17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 ZNF598Q86UK7 904 aaKnown RBP17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 TMEM87AQ8NBN3 555 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 FEZF2Q8TBJ5 459 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 GJA10Q969M2 543 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 NECTIN4Q96NY8 510 aa17.68■□□□□ 0.42
CHMP4A-207ENST00000533523 CLASP2O75122 1294 aaKnown RBP17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 EOMESO95936 686 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 WEE2P0C1S8 567 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 ITIH3Q06033 890 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 DRP2Q13474 957 aa17.67■□□□□ 0.42
CHMP4A-207ENST00000533523 NTRK3Q16288 839 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms