RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CPT1AP50416 773 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 NFIL3Q16649 462 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 TMC6Q7Z403 805 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 ASAP3Q8TDY4 903 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 ERO1AQ96HE7 468 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 SUGCTQ9HAC7 445 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 EXOC7Q9UPT5 735 aa23.11■■□□□ 1.29
VPS28-208ENST00000527797 ZSWIM8A7E2V4 1837 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 NR3C1P04150 777 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 SCP2P22307 547 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 GLRA2P23416 452 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 CCDC40Q4G0X9 1142 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 HS1BP3Q53T59 392 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 VSTM4Q8IW00 320 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 IMPACTQ9P2X3 320 aa23.1■■□□□ 1.29
VPS28-208ENST00000527797 COL1A2P08123 1366 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 DENND3A2RUS2 1198 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 CLIC2O15247 247 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 DUSP11O75319 330 aaKnown RBP23.09■■□□□ 1.29
VPS28-208ENST00000527797 PRKCSHP14314 528 aaPredicted RBP23.09■■□□□ 1.29
VPS28-208ENST00000527797 NAMPTP43490 491 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 ARHGEF6Q15052 776 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 TRAPPC12Q8WVT3 735 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 KIFC3Q9BVG8 833 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 CGNQ9P2M7 1197 aaKnown RBP23.09■■□□□ 1.29
VPS28-208ENST00000527797 TBX20Q9UMR3 447 aa23.09■■□□□ 1.29
VPS28-208ENST00000527797 TEX33O43247 280 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 FKTNO75072 461 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 SNRPFP62306 86 aaKnown RBP23.08■■□□□ 1.29
VPS28-208ENST00000527797 RETREG2Q8NC44 543 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 DEPTORQ8TB45 409 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 NOC4LQ9BVI4 516 aaKnown RBP23.08■■□□□ 1.29
VPS28-208ENST00000527797 AGPAT3Q9NRZ7 376 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 ARHGAP28Q9P2N2 729 aa23.08■■□□□ 1.29
VPS28-208ENST00000527797 MAGEB2O15479 319 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 CNGA1P29973 690 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 DNM2P50570 870 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 IGBP1P78318 339 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 CACNB2Q08289 660 aaPredicted RBP23.08■■□□□ 1.28
VPS28-208ENST00000527797 CCDC186Q7Z3E2 898 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 PSPC1Q8WXF1 523 aaKnown RBP23.08■■□□□ 1.28
VPS28-208ENST00000527797 IKZF4Q9H2S9 585 aa23.08■■□□□ 1.28
VPS28-208ENST00000527797 LRRIQ4A6NIV6 560 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 LGALS16A8MUM7 142 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 PES1O00541 588 aaKnown RBP23.07■■□□□ 1.28
VPS28-208ENST00000527797 C22orf31O95567 290 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 MARSP56192 900 aaKnown RBP23.07■■□□□ 1.28
VPS28-208ENST00000527797 MYBPC2Q14324 1141 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 MXD4Q14582 209 aaPredicted RBP23.07■■□□□ 1.28
VPS28-208ENST00000527797 EFCAB12Q6NXP0 572 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 MAP4K3Q8IVH8 894 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 LRRC71Q8N4P6 559 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 PRPF31Q8WWY3 499 aaKnown RBP23.07■■□□□ 1.28
VPS28-208ENST00000527797 THSD7BQ9C0I4 1608 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 ADGRA3Q8IWK6 1321 aa23.07■■□□□ 1.28
VPS28-208ENST00000527797 MYH11P35749 1972 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 SLC16A3O15427 465 aaKnown RBP23.06■■□□□ 1.28
VPS28-208ENST00000527797 SEPT4O43236 478 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 ADCY3O60266 1144 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 ELNP15502 786 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 KLRC1P26715 233 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 UBXN1Q04323 297 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 TRIM32Q13049 653 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 PPFIA1Q13136 1202 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 MKRN4PQ13434 485 aaPredicted RBP23.06■■□□□ 1.28
VPS28-208ENST00000527797 DRP2Q13474 957 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 FSCN1Q16658 493 aaKnown RBP23.06■■□□□ 1.28
VPS28-208ENST00000527797 MAN2A1Q16706 1144 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 SPECC1LQ69YQ0 1117 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 RAET1EQ8TD07 263 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 KCNN1Q92952 543 aa23.06■■□□□ 1.28
VPS28-208ENST00000527797 SUCLA2Q9P2R7 463 aaPredicted RBP23.06■■□□□ 1.28
VPS28-208ENST00000527797 F2P00734 622 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 MYL3P08590 195 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 BEX3Q00994 111 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 CAPSQ13938 189 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 CEP135Q66GS9 1140 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 FRMD5Q7Z6J6 570 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 SLC9A9Q8IVB4 645 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 METTL13Q8N6R0 699 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 DMAC2Q9NW81 257 aa23.05■■□□□ 1.28
VPS28-208ENST00000527797 HMGCRP04035 888 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 EPB41P11171 864 aaKnown RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 PRKAR2AP13861 404 aaKnown RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 PBX1P40424 430 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 GSDMDP57764 484 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 GJA9P57773 515 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 LAMTOR4Q0VGL1 99 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 STRN3Q13033 797 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 GRIK4Q16099 956 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 PTPN21Q16825 1174 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 VWA3BQ502W6 1294 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 MIIPQ5JXC2 388 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 MTHFD1LQ6UB35 978 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 C12orf56Q8IXR9 622 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 ZNF296Q8WUU4 475 aaPredicted RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 KAT2BQ92831 832 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 SPC25Q9HBM1 224 aa23.04■■□□□ 1.28
VPS28-208ENST00000527797 METTL14Q9HCE5 456 aaKnown RBP23.04■■□□□ 1.28
VPS28-208ENST00000527797 RRN3P2A6NIE6 340 aa23.04■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms