RNA–Protein interactions for RNA: ENST00000515397.1

VCAN-212, Transcript of versican, humanhuman

TSL 2

Gene VCAN, Length 536 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-212ENST00000515397 FERMT3Q86UX7 667 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 ECHDC2Q86YB7 292 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 RNF149Q8NC42 400 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 CLP1Q92989 425 aaKnown RBP12.81□□□□□ -0.36
VCAN-212ENST00000515397 CCDC43Q96MW1 224 aaKnown RBP12.81□□□□□ -0.36
VCAN-212ENST00000515397 MTRQ99707 1265 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 JPH2Q9BR39 696 aaPredicted RBP12.81□□□□□ -0.36
VCAN-212ENST00000515397 C1orf112Q9NSG2 853 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 ANKEF1Q9NU02 776 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 RNF19AQ9NV58 838 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 TYW1Q9NV66 732 aaKnown RBP12.81□□□□□ -0.36
VCAN-212ENST00000515397 PIN4Q9Y237 131 aaKnown RBP12.81□□□□□ -0.36
VCAN-212ENST00000515397 PCDHGC5Q9Y5F6 944 aa12.81□□□□□ -0.36
VCAN-212ENST00000515397 CCT6AP40227 531 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 PBX3P40426 434 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 TRAPPC10P48553 1259 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 ZRSR1Q15695 479 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 TWF2Q6IBS0 349 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 LRRC55Q6ZSA7 311 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 EP400NLQ6ZTU2 488 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 ZNF410Q86VK4 478 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 CMTR2Q8IYT2 770 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 KLHL23Q8NBE8 558 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 HELQQ8TDG4 1101 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 MRPL38Q96DV4 380 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 SAMD11Q96NU1 681 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 CASD1Q96PB1 797 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 PLIN2Q99541 437 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 POLR3FQ9H1D9 316 aaPredicted RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 TMEM161AQ9NX61 479 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 THEGQ9P2T0 379 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 LRWD1Q9UFC0 647 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 KIAA1024Q9UPX6 916 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 KIF3AQ9Y496 699 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 ZSCAN21Q9Y5A6 473 aaPredicted RBP12.8□□□□□ -0.36
VCAN-212ENST00000515397 COL4A6Q14031 1691 aa12.8□□□□□ -0.36
VCAN-212ENST00000515397 ITGB1P05556 798 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 ATF7P17544 494 aaPredicted RBP12.79□□□□□ -0.36
VCAN-212ENST00000515397 SFPQP23246 707 aaKnown RBP eCLIP12.79□□□□□ -0.36
VCAN-212ENST00000515397 GLRA2P23416 452 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 GTF2F1P35269 517 aaKnown RBP eCLIP12.79□□□□□ -0.36
VCAN-212ENST00000515397 ARL2P36404 184 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 KCNQ1P51787 676 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CDC42EP1Q00587 391 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CUL4AQ13619 759 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CAMK1Q14012 370 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 TCEAL5Q5H9L2 206 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CLLU1OSQ5K130 101 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CDR2LQ86X02 465 aaPredicted RBP12.79□□□□□ -0.36
VCAN-212ENST00000515397 ERMNQ8TAM6 284 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 NEK9Q8TD19 979 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 TCP11Q8WWU5 503 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 CPB2Q96IY4 423 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 ASB2Q96Q27 587 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 NACC1Q96RE7 527 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 POLR3CQ9BUI4 534 aaPredicted RBP12.79□□□□□ -0.36
VCAN-212ENST00000515397 IGFLR1Q9H665 355 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 TUFT1Q9NNX1 390 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 PLAGL2Q9UPG8 496 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 USP20Q9Y2K6 914 aa12.79□□□□□ -0.36
VCAN-212ENST00000515397 A0A0U1RQF3 1178 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 VPS37CA5D8V6 355 aaPredicted RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 DGAT1O75907 488 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 RB1P06400 928 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 RPA1P27694 616 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 HOXA11P31270 313 aaPredicted RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 IRS1P35568 1242 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 FXR2P51116 673 aaKnown RBP eCLIP12.78□□□□□ -0.364e-8■■■■■ 35.7
VCAN-212ENST00000515397 MRPS5P82675 430 aaKnown RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 CAPSQ13938 189 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 PTPROQ16827 1216 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 FAM173BQ6P4H8 233 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 ZNF598Q86UK7 904 aaKnown RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 EXOC8Q8IYI6 725 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 ZNF710Q8N1W2 664 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 SPPL3Q8TCT6 385 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 SNX29Q8TEQ0 813 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 NECAB3Q96P71 396 aaPredicted RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 C11orf84Q9BUA3 381 aaPredicted RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 INO80BQ9C086 356 aaPredicted RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 CWH43Q9H720 699 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 ELAC1Q9H777 363 aaKnown RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 DDX19AQ9NUU7 478 aaKnown RBP12.78□□□□□ -0.36
VCAN-212ENST00000515397 LMCD1Q9NZU5 365 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 INPP5FQ9Y2H2 1132 aa12.78□□□□□ -0.36
VCAN-212ENST00000515397 COL4A4P53420 1690 aaPredicted RBP12.77□□□□□ -0.36
VCAN-212ENST00000515397 XIRP2A4UGR9 3374 aa12.77□□□□□ -0.36
VCAN-212ENST00000515397 ARHGEF35A5YM69 484 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 NT5C1B-RDH14C9J2C7 533 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 E9PMD0 336 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 C5orf67F2Z3F1 127 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 ASAP2O43150 1006 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 B4GALT5O43286 388 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 XRCC6P12956 609 aaKnown RBP eCLIP12.77□□□□□ -0.37
VCAN-212ENST00000515397 LIG1P18858 919 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 PHKA2P46019 1235 aa12.77□□□□□ -0.37
VCAN-212ENST00000515397 AFF1P51825 1210 aaKnown RBP12.77□□□□□ -0.37
VCAN-212ENST00000515397 PTENP60484 403 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms