RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 KIAA0232Q92628 1395 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 BTBD18B2RXH4 712 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 FKBP6O75344 327 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ALBP02768 609 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 GNAT1P11488 350 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 MYCLP12524 364 aaPredicted RBP11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 PDIA3P30101 505 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 TAB1Q15750 504 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 KBTBD12Q3ZCT8 623 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 TTC39CQ8N584 583 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ZNF579Q8NAF0 562 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ZCRB1Q8TBF4 217 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ANTXR1Q9H6X2 564 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 TUBGCP4Q9UGJ1 667 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 A0A1W2PQC6 194 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 GFPT2O94808 682 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 CALB1P05937 261 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 DLATP10515 647 aaKnown RBP11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 LSP1P33241 339 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 EPS8Q12929 822 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 NAALADL2Q58DX5 795 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 PCNX4Q63HM2 1172 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 CNBD1Q8NA66 436 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 MTERF3Q96E29 417 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 NSL1Q96IY1 281 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ZFYVE19Q96K21 471 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 NACC1Q96RE7 527 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 PICK1Q9NRD5 415 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 DISC1Q9NRI5 854 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 RABGEF1Q9UJ41 708 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 CLIC4Q9Y696 253 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ABCC5O15440 1437 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 AREL1O15033 823 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 PDE8AO60658 829 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 TTKP33981 857 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 KYNUQ16719 465 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ARMCX2Q7L311 632 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 MAEAQ7L5Y9 396 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 RNF217Q8TC41 542 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 GJA10Q969M2 543 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 DCAF5Q96JK2 942 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 APOL4Q9BPW4 351 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 BBS2Q9BXC9 721 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 BFARQ9NZS9 450 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 O00370 1275 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ZNF197O14709 1029 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 AKAP10O43572 662 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 SLC4A1P02730 911 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 BNC1Q01954 994 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ANGPTL8Q6UXH0 198 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 CYP4F11Q9HBI6 524 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ADGRG1Q9Y653 693 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 IVNS1ABPQ9Y6Y0 642 aa11.91□□□□□ -0.5
LIMCH1-217ENST00000512946 ADCY9O60503 1353 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 DNALI1O14645 258 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 XPO1O14980 1071 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 PALMO75781 387 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 GRK2P25098 689 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 IRAK1P51617 712 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM160B1Q5W0V3 765 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 ITPRIPL1Q6GPH6 555 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 ARMCX6Q7L4S7 300 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 TSSK1BQ9BXA7 367 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 OLA1Q9NTK5 396 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 KLHL20Q9Y2M5 609 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 DTNAQ9Y4J8 743 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 FMNL1O95466 1100 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 ABCB1P08183 1280 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 POLR2MP0CAP2 368 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 DCTN2Q13561 401 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 MAP4K1Q92918 833 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 VPS11Q9H270 941 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 UBN1Q9NPG3 1134 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 COPG2Q9UBF2 871 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 TCP11X1B4DZS4 312 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 TAP1Q03518 808 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 WASHC5Q12768 1159 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 UGP2Q16851 508 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIM72Q6ZMU5 477 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 C4orf50Q6ZRC1 276 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 CYFIP2Q96F07 1278 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 HINFPQ9BQA5 517 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 TRIM54Q9BYV2 358 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 KIAA1586Q9HCI6 787 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 SH3TC1Q8TE82 1336 aa11.9□□□□□ -0.5
LIMCH1-217ENST00000512946 FAM47DPA6NHR8 397 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 TRIM66O15016 1216 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 ZSCAN9O15535 394 aaPredicted RBP11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 SRP72O76094 671 aaKnown RBP11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 ORC2Q13416 577 aaPredicted RBP11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 TSC22D1Q15714 1073 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 PTPROQ16827 1216 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 CCDC142Q17RM4 750 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 CDKL3Q8IVW4 592 aaPredicted RBP11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 RIN3Q8TB24 985 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 SSH3Q8TE77 659 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 TRAPPC9Q96Q05 1148 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 FBXL5Q9UKA1 691 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 AURKCQ9UQB9 309 aa11.9□□□□□ -0.51
LIMCH1-217ENST00000512946 CENPXA8MT69 81 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms