RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 GNPTABQ3T906 1256 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 COLEC12Q5KU26 742 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 KAZNQ674X7 775 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 TMC5Q6UXY8 1006 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 MIER3Q7Z3K6 550 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ZSCAN1Q8NBB4 408 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 LSM14AQ8ND56 463 aaKnown RBP5.56□□□□□ -1.52
USP54-216ENST00000498143 PPP1R14CQ8TAE6 165 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 URGCPQ8TCY9 931 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 GPR152Q8TDT2 470 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 SLC39A7Q92504 469 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 SKA1Q96BD8 255 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 NLRP4Q96MN2 994 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 CTAGE1Q96RT6 745 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 EVA1BQ9NVM1 165 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 ATPIF1Q9UII2 106 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 UTP18Q9Y5J1 556 aaKnown RBP eCLIP5.56□□□□□ -1.52
USP54-216ENST00000498143 CROCC2H7BZ55 1655 aa5.56□□□□□ -1.52
USP54-216ENST00000498143 C2CD3Q4AC94 2353 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 RTL9Q8NET4 1388 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 MROH5Q6ZUA9 1318 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 XRN1Q8IZH2 1706 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 A0A0G2JLL6 359 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 GOLGA8QA0A0J9YX86 632 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 LCHNA4D1U4 455 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GOLGA8OA6NCC3 632 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 FAM170BA6NMN3 283 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GOLGA8NF8WBI6 632 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 YEATS4O95619 227 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 URODP06132 367 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ASGR2P07307 311 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 NAT1P18440 290 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 KRT20P35900 424 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ASPHQ12797 758 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PRRT2Q7Z6L0 340 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 PNMA1Q8ND90 353 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PHC3Q8NDX5 983 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CTCFLQ8NI51 663 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 AFAP1L1Q8TED9 768 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TEKT4Q8WW24 435 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TSC22D3Q99576 134 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 EIF2AQ9BY44 585 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 INO80BQ9C086 356 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 MRPL46Q9H2W6 279 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 RPAP1Q9BWH6 1393 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 BAHCC1Q9P281 2608 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 LRRD1A4D1F6 860 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PER2O15055 1255 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 XYLBO75191 536 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 UBTFL1P0CB47 393 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 CCNCP24863 283 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CASP2P42575 452 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PHKA1P46020 1223 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 SEMG2Q02383 582 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CUL4BQ13620 913 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 LRRC32Q14392 662 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TREML2Q5T2D2 321 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ANKRD45Q5TZF3 282 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 NXNQ6DKJ4 435 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TUBA3EQ6PEY2 450 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 SLC30A9Q6PML9 568 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 SMG7Q92540 1137 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 PIGKQ92643 395 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GAD1Q99259 594 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 SPZ1Q9BXG8 430 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 EHMT1Q9H9B1 1298 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 FAM114A2Q9NRY5 505 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TFIP11Q9UBB9 837 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 CABIN1Q9Y6J0 2220 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 HNRNPCL2B2RXH8 293 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 MYO1CO00159 1063 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 APOL1O14791 398 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 HNRNPCL1O60812 293 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 STAM2O75886 525 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PROS1P07225 676 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 HPDP32754 393 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 CTNNA1P35221 906 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 PCYT1AP49585 367 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ARID5AQ03989 594 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CCDC170Q8IYT3 715 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GOLGA5Q8TBA6 731 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GANCQ8TET4 914 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 GPATCH3Q96I76 525 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ZNF594Q96JF6 807 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 ALS2CR12Q96Q35 445 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 ARPC5LQ9BPX5 153 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 TMEM165Q9HC07 324 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 AATFQ9NY61 560 aaKnown RBP eCLIP5.55□□□□□ -1.52
USP54-216ENST00000498143 SERPINB13Q9UIV8 391 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 AHCTF1Q8WYP5 2266 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 PIK3C2AO00443 1686 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 KDM6AO15550 1401 aaPredicted RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 GJB5O95377 273 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CXCL14O95715 111 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CLTAP09496 248 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CCT6AP40227 531 aaKnown RBP5.55□□□□□ -1.52
USP54-216ENST00000498143 SLC1A4P43007 532 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 USH1GQ495M9 461 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 CCDC183Q5T5S1 534 aa5.55□□□□□ -1.52
USP54-216ENST00000498143 C10orf62Q5T681 223 aaPredicted RBP5.55□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms