RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 DLG4P78352 724 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF211Q13398 564 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 RPS6KA1Q15418 735 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 GLYCTKQ8IVS8 523 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 TEKT3Q9BXF9 490 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 EVI5O60447 810 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 GAP43P17677 238 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 HNRNPH1P31943 449 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 PAK2Q13177 524 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF572Q7Z3I7 529 aaPredicted RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 ELMO3Q96BJ8 720 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 SH3GL2Q99962 352 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 METTL14Q9HCE5 456 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 KCNH7Q9NS40 1196 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 FZD1Q9UP38 647 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 NR2E1Q9Y466 385 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF536O15090 1300 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 RBBP6Q7Z6E9 1792 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 EIF2AK2P19525 551 aaKnown RBP17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 AADACL2Q6P093 401 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 MDM1Q8TC05 714 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 NACC1Q96RE7 527 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 TRIM51Q9BSJ1 452 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 OSGEPQ9NPF4 335 aa17.95■□□□□ 0.46
CCDC88B-210ENST00000494566 FRMPD4Q14CM0 1322 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 TLDC2A0PJX2 215 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 K7ENM7 598 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 WNT10BO00744 389 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 FMO5P49326 533 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 JAM2P57087 298 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 KCNV1Q6PIU1 500 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 LNX1Q8TBB1 728 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 STK32BQ9NY57 414 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 TMEM110-MUSTN1A8MSY1 372 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 SLC16A3O15427 465 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 TTI1O43156 1089 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 EXOC3O60645 756 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 CTNNA1P35221 906 aaKnown RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 DRAP1Q14919 205 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 SPRED3Q2MJR0 410 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 ARHGAP27Q6ZUM4 889 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 MIER3Q7Z3K6 550 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 PALB2Q86YC2 1186 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 INPP4AQ96PE3 977 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 MXRA8Q9BRK3 442 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 CD248Q9HCU0 757 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 GPRC5CQ9NQ84 441 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 DNAJC12Q9UKB3 198 aa17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 ASTN2O75129 1339 aaPredicted RBP17.94■□□□□ 0.46
CCDC88B-210ENST00000494566 RXRBP28702 533 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 SPP2Q13103 211 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 MAPK7Q13164 816 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 ITGB3BPQ13352 177 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 HS2ST1Q7LGA3 356 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 IQCKQ8N0W5 287 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 EFCC1Q9HA90 598 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 HGSO14964 777 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 SORBS3O60504 671 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 HSD17B3P37058 310 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF772Q68DY9 489 aaPredicted RBP17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 PADI6Q6TGC4 694 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 DAAM2Q86T65 1068 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 ZNF473Q8WTR7 871 aaKnown RBP17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 TAS2R14Q9NYV8 317 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 IGSF9BQ9UPX0 1349 aa17.93■□□□□ 0.46
CCDC88B-210ENST00000494566 KRIT1O00522 736 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 MYCLP12524 364 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 HMGB2P26583 209 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 CXCL9Q07325 125 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 QPCTQ16769 361 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 CCT8L2Q96SF2 557 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 FBXL5Q9UKA1 691 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 NOVA2Q9UNW9 492 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 FRMD4BQ9Y2L6 1034 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 STK24Q9Y6E0 443 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 LOC102724159A0A0B4J2E5 919 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 EIF3DO15371 548 aaKnown RBP eCLIP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 SART1O43290 800 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 KCNA3P22001 575 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 ACTN3Q08043 901 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 RASA3Q14644 834 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 PWP2Q15269 919 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 UBAP2Q5T6F2 1119 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 METTL13Q8N6R0 699 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 USP38Q8NB14 1042 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 GDF3Q9NR23 364 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 FEM1BQ9UK73 627 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 ZHX2Q9Y6X8 837 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 F8VZ95 297 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 FLOT1O75955 427 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 KIF4AO95239 1232 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 MRPS9P82933 396 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 ITIH3Q06033 890 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 DHX9Q08211 1270 aaKnown RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 UGCGQ16739 394 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 ALS2CLQ60I27 953 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 WNK4Q96J92 1243 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 JPH2Q9BR39 696 aaPredicted RBP17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 CBWD1Q9BRT8 395 aa17.92■□□□□ 0.46
CCDC88B-210ENST00000494566 GOLGA8IPA6NC78 632 aa17.91■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms